Table 2.
mRNA pathway analysis in oesophageal squamous cell carcinoma
| Path_id | Path_name | Path_diffgene_count | Path_gene_count | Enrichment | P value | FDR |
| 05202 | Transcriptional misregulation in cancer | 12 | 179 | 17.67528856 | 2.34961E-11 | 3.94734E-09 |
| 04512 | ECM-receptor interaction | 9 | 87 | 27.27479872 | 2.19839E-10 | 1.84664E-08 |
| 04510 | Focal adhesion | 10 | 207 | 12.73702356 | 3.3619E-08 | 1.79605E-06 |
| 04151 | PI3K-Akt signalling pathway | 12 | 345 | 9.170656962 | 4.27632E-08 | 1.79605E-06 |
| 05146 | Amoebiasis | 7 | 108 | 17.08883994 | 8.29201E-07 | 2.78612E-05 |
| 01100 | Metabolic pathways | 19 | 1234 | 4.059539194 | 1.27125E-06 | 3.5595E-05 |
| 05200 | Pathways in cancer | 11 | 397 | 7.305340716 | 1.71545E-06 | 4.11707E-05 |
| 04810 | Regulation of actin cytoskeleton | 8 | 214 | 9.856313558 | 7.4028E-06 | 0.000155459 |
| 00590 | Arachidonic acid metabolism | 5 | 62 | 21.26261191 | 1.62994E-05 | 0.000304255 |
| 04115 | p53 signalling pathway | 5 | 68 | 19.38649909 | 2.57756E-05 | 0.00043303 |
| 04060 | Cytokine-cytokine receptor interaction | 8 | 265 | 7.959438118 | 3.5607E-05 | 0.000543816 |
| 04974 | Protein digestion and absorption | 5 | 90 | 14.64757709 | 0.000101556 | 0.001421784 |
| 04666 | Fc gamma R-mediated phagocytosis | 5 | 92 | 14.3291515 | 0.000112939 | 0.001459525 |
| 05205 | Proteoglycans in cancer | 6 | 203 | 7.792799635 | 0.000540094 | 0.006142299 |
| 04610 | Complement and coagulationcasc | 4 | 69 | 15.28442827 | 0.000574387 | 0.006142299 |
| 04611 | Platelet activation | 5 | 130 | 10.14063029 | 0.000584981 | 0.006142299 |
| 05132 | Salmonella infection | 4 | 86 | 12.2630878 | 0.001341668 | 0.01252223 |
| 05222 | Small cell lung cancer | 4 | 86 | 12.2630878 | 0.001341668 | 0.01252223 |
| 05323 | Rheumatoid arthritis | 4 | 89 | 11.84972529 | 0.001529001 | 0.01351959 |
| 00564 | Glycerophospholipid metabolism | 4 | 95 | 11.10132159 | 0.001958567 | 0.016451962 |