Table 1. Short RNA sequences employed in this study.
RNA sequence id | Source | RNA sequence (5′→ 3′) | Length (bp) |
---|---|---|---|
EBV-miR-1-5p | Ebola virus | AAAAAGUCCAUAAUGCUGGGGA | 22 |
EBV-miR-1-3p | Ebola virus | GCCACCAUAGGACUUUUUCAAU | 22 |
EBV-miR-2-3p | Ebola virus | UUAUCCUUCUUGAAUCCUGAGA | 22 |
PA-miR-1-5p-1 | P. acnes | GCAUUAUGGACU | 12 |
PA-miR-1-5p-2 | P. acnes | AUCAUGGACUUUUU | 14 |
PA-miR-1-5p-3 | P. acnes | AAGUCCAUAAU | 11 |
PA-miR-1-5p-4 | P. acnes | CCCCAGCAUUA | 11 |
PA-miR-1-3p-1 | P. acnes | CCUAUGGUGGC | 11 |
PA-miR-1-3p-2 | P. acnes | GCCACCAUAGG | 11 |
PA-miR-1-3p-3 | P. acnes | GUCCUAUGGUG | 11 |
PA-miR-1-3p-4 | P. acnes | AUAGGACUUUU | 11 |
PA-miR-1-3p-5 | P. acnes | AGGACUUUUUCGAU | 14 |
PA-miR-1-3p-6 | P. acnes | UGAAAAAGUCC | 11 |
PA-miR-1-3p-7 | P. acnes | ACUUUUUCAAU | 11 |
PA-miR-2-3p-1 | P. acnes | UAUCCUUCUUGA | 12 |
PA-miR-2-3p-2 | P. acnes | AUCCUUCUUGA | 11 |
PA-miR-2-3p-3 | P. acnes | UCAAGAAGGAU | 11 |
PA-miR-2-3p-4 | P. acnes | UCCUUCUUGAA | 11 |
PA-miR-2-3p-5 | P. acnes | CCUUCUUGAAU | 11 |
hsa-miR-1248 | Human | ACCUUCUUGUAUAAGCACUGUGCUAAA | 27 |
Notes.
P. acnes, Propionibacterium acnes KPA171202. The target genes of RNA fragments were predicted by TargetScanHuman online software. The seven nucleotides highlighted in bold for each sequence are the seed sequences.