Table 2.
The Gene Identification Information for RAD-Seq Markers That Were Outliers from Both LOSITAN and BayeScan Analyses, with Chromosomal Location, Gene Sequence Description, Min e-value, and Mean Similarity (blastn), as well as Gene Ontology Term Links (PANTHER)
| Gene ID | BLAST Hit Description | Min. e-Value | Mean Similarity (%) | PANTHER Family/Subfamily | Seq. Name | Chromosome |
|---|---|---|---|---|---|---|
| METRN | Anas platyrhynchos meteorin-like transcript variant mrna | 1.54E-34 | 93.33 | METEORIN (PTHR28593: SF4) | RADid_0003361_depth_116 | Autosomal |
| ARHGAP44 | Gallus gallus rho gtpase activating protein 44 transcript variant mrna | 6.54E-33 | 95.19 | RHO GTPASE-ACTIVATING PROTEIN 44 (PTHR14130: SF16) | RADid_0006028_depth_98 | Autosomal |
| TOPORSa | Anas platyrhynchos e3 ubiquitin-protein ligase topors-like partial mrna | 2.97E-37 | 100.00 | E3 UBIQUITIN-PROTEIN LIGASE TOPORS (PTHR22937: SF86) | RADid_0016436_depth_109 | Z-linked |
| ZNF469 | Anas platyrhynchos zinc finger protein 469 mrna | 1.26E-35 | 98.00 | ZINC FINGER PROTEIN 469 (PTHR21465: SF3) | RADid_0021978_depth_146 | Autosomal |
| IL20 | Anas platyrhynchos interleukin 20 mrna | 6.54E-33 | 89.50 | INTERLEUKIN-20 (PTHR10078: SF59) | RADid_0022434_depth_89 | Autosomal |
| — | Gallus gallus bac clone tam33-29c6 from chromosome complete sequence | 5.74E-21 | 89.00 | — | RADid_0027544_depth_59 | Z-linked |
| — | Opisthocomus hoazin bio-material lwl<deu | 1.04E-17 | 85.00 | — | RADid_0027947_depth_120 | Z-linked |
| CAMKK1 | Anas platyrhynchos calcium calmodulin-dependent protein kinase kinase alpha transcript variant mrna | 1.26E-35 | 98.00 | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE 1 (PTHR24347: SF330) | RADid_0032309_depth_138 | Autosomal |
| TRIOBP | Mus musculus trio and f-actin binding protein transcript variant mrna | 1.54E-34 | 91.78 | TRIO AND F-ACTIN-BINDING PROTEIN (PTHR17271: SF15) | RADid_0035703_depth_125 | Autosomal |
| F8b | Anas platyrhynchos coagulation factor procoagulant component mrna | 4.41E-35 | 92.67 | COAGULATION FACTOR VIII (PTHR10127: SF725) | RADid_0042196_depth_153 | Autosomal |
| SYDE2 | Anas platyrhynchos synapse defective rho homolog 2 (elegans) transcript variant mrna | 7.97E-32 | 95.00 | RHO GTPASE-ACTIVATING PROTEIN SYDE2 (PTHR23176: SF89) | RADid_0043458_depth_294 | Autosomal |
| LIPA | Anas platyrhynchos lysosomal acid lipase cholesteryl ester hydrolase-like transcript variant mrna | 6.54E-33 | 98.00 | LYSOSOMAL ACID LIPASE/CHOLESTERYL ESTER HYDROLASE (PTHR11005: SF61) | RADid_0044346_depth_103 | Autosomal |
| IGF1b | Anser anser insulin-like growth factor i (igf-i) intron 3 | 1.88E-14 | 98.00 | INSULIN-LIKE GROWTH FACTOR I (PTHR11454: SF24) | RADid_0050513_depth_248 | Autosomal |
| TRIM71 | Anas platyrhynchos e3 ubiquitin-protein ligase trim71-like mrna | 1.26E-35 | 98.00 | E3 UBIQUITIN-PROTEIN LIGASE TRIM71 (PTHR24103: SF544) | RADid_0053903_depth_95 | Autosomal |
| — | Gallus gallus bac clone ch261-26d19 from chromosome complete sequence | 1.04E-17 | 87.00 | — | RADid_0061725_depth_138 | Z-linked |
| USP24 | Anas platyrhynchos ubiquitin specific peptidase 24 mrna | 1.53E-34 | 93.71 | — | RADid_0064189_depth_48 | Autosomal |
| CLEC2L | Anas platyrhynchos c-type lectin domain family 2 member l-like transcript variant misc_rna | 1.26E-35 | 96.00 | C-TYPE LECTIN DOMAIN FAMILY 2 MEMBER L (PTHR22800: SF216) | RADid_0066143_depth_105 | Z-linked |
| ARHGEF10 | Chlorocebus sabaeus rho guanine nucleotide exchange factor 10-like transcript variant mrna | 1.75E-27 | 88.63 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 18 (PTHR12673: SF204) | RADid_0068177_depth_21 | Autosomal |
| VIPR1 | Ficedula albicollis vasoactive intestinal polypeptide receptor-like mrna | 9.71E-12 | 85.00 | VASOACTIVE INTESTINAL POLYPEPTIDE RECEPTOR 1 (PTHR12011: SF363) | RADid_0069283_depth_65 | Z-linked |
| MIEF1/MID51 | Anas platyrhynchos smith-magenis syndrome chromosome candidate 7-like transcript variant mrna (mitochondrial dynamic protein MID51, mitochondrial elongation factor 1 MIEF1) | 2.97E-37 | 100.00 | MITOCHONDRIAL DYNAMICS PROTEIN MID51 (PTHR16451: SF16) | RADid_0071374_depth_108 | Autosomal |
| — | Anser cygnoides clone zaas082 microsatellite sequence | 2.43E-19 | 82.00 | — | RADid_0073508_depth_100 | Z-linked |
| APEH | Ficedula albicollis vasoactive intestinal polypeptide receptor-like mrna | 5.03E-28 | 92.50 | ACYLAMINO-ACID-RELEASING ENZYME (PTHR42776: SF4) | RADid_0075723_depth_129 | Autosomal |
| TSPAN19 | Anas platyrhynchos tetraspanin 19 transcript variant mrna | 8.49E-19 | 94.07 | TETRASPANIN-19-RELATED (PTHR19282: SF274) | RADid_0075864_depth_49 | Autosomal |
| TTLL11 | Anas platyrhynchos tubulin tyrosine ligase-like member 11 transcript variant mrna | 2.97E-37 | 100.00 | TUBULIN POLYGLUTAMYLASE TTLL11 (PTHR12241: SF136) | RADid_0081068_depth_86 | Autosomal |
| DCIR | Anas platyrhynchos dendritic cell immunoreceptor complete cds dcar*null complete sequence and dendritic cell immunoactivating receptor complete cds | 4.13E-29 | 93.00 | C-TYPE LECTIN DOMAIN FAMILY 4 MEMBER A (PTHR22802: SF289) | RADid_0081629_depth_106 | Z-linked |
| MRPL54 | Anas platyrhynchos mitochondrial ribosomal protein l54 partial mrna | 1.26E-35 | 87.50 | 39S RIBOSOMAL PROTEIN L54, MITOCHONDRIAL (PTHR28595: SF2) | RADid_0084279_depth_80 | Autosomal |
| ARHGEF18 | Anas platyrhynchos rho rac guanine nucleotide exchange factor 18 transcript variant mrna | 2.97E-37 | 93.00 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 18 (PTHR12673: SF204) | RADid_0091284_depth_213 | Autosomal |
| MED10 | Anas platyrhynchos mediator complex subunit 10 mrna | 2.97E-37 | 100.00 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 10 (PTHR13345: SF7) | RADid_0098634_depth_34 | Autosomal |
| BMP2b | Anas platyrhynchos bone morphogenetic protein 2-like mrna | 1.26E-35 | 86.50 | BONE MORPHOGENETIC PROTEIN 2 (PTHR11848: SF210) | RADid_0105984_depth_195 | Autosomal |
| DCIR | Anas platyrhynchos dendritic cell immunoreceptor complete cds dcar*null complete sequence and dendritic cell immunoactivating receptor complete cds | 2.78E-31 | 85.70 | C-TYPE LECTIN DOMAIN FAMILY 4 MEMBER A (PTHR22802: SF289) | RADid_0107007_depth_106 | Autosomal |
| NNTa | Chaetura pelagica nicotinamide nucleotide transhydrogenase mrna | 3.39E-30 | 90.83 | NICOTINAMIDE NUCLEOTIDE TRANSHYDROGENASE (PTHR10160: SF25) | RADid_0107938_depth_49 | Z-linked |
| — | Gallus gallus bac clone ch261-78c3 from chromosome complete sequence | 2.28E-13 | 91.00 | — | RADid_0115589_depth_45 | Z-linked |
| TLE2 | Aquila chrysaetos canadensis transducin-like enhancer of split 2 transcript variant mrna | 1.75E-27 | 91.48 | AMINO-TERMINAL ENHANCER OF SPLIT-RELATED (PTHR10814: SF33) | RADid_0118842_depth_161 | Autosomal |
| DCIR | Anas platyrhynchos dendritic cell immunoreceptor complete cds dcar*null complete sequence and dendritic cell immunoactivating receptor complete cds | 2.60E-25 | 87.50 | C-TYPE LECTIN DOMAIN FAMILY 4 MEMBER A (PTHR22802: SF289) | RADid_0124734_depth_48 | Z-linked |
a
Candidates of top interest.
b
Candidates of medium interest.