Table 2.
Details of the differentially expressed TF genes and their corresponding fold change value (log2FC) under submergence in IR64 and IR64-Sub1
| Gene # | Locus ID ver 7.0 | Gene Description/TF Family | Gene name | og2FC | |
|---|---|---|---|---|---|
| Genotype specific differences |
1 | LOC_Os01g72370 | Helix-loop-helix DNA-binding domain containing protein; bHLH | OsIRO2/OsbHLH056 | −0.64 |
| 2 | LOC_Os10g25230 | ZIM domain containing protein; Tify | OsTIFY11e/OsZIM18/OsJAZ13 | −0.50 | |
| 3 | LOC_Os10g25290 | ZIM domaincontaining protein; Tify | OsTIFY11d/OsJAZ12 | −0.36 | |
| 4 | LOC_Os01g60640 | WRKY21; WRKY | OsWRKY21 | −0.44 | |
| Submergence responsive in IR64 |
1 | LOC_Os07g22730 | AP2 domain containing protein; AP2-EREBP | OsERF136/AP2/EREBP#106 | −0.19 |
| 2 | LOC_Os05g27930 | AP2 domain containing protein; AP2-EREBP | OsERF042/AP2/EREBP#048/OsDREB2b | −0.28 | |
| 3 | LOC_Os04g47059 | bHLH | OsbHLH16/OSB2 | 0.26 | |
| 4 | LOC_Os01g36220 | bZIP transcription factor domain containing protein; bZIP | OsbZIP4 | 0.31 | |
| 5 | LOC_Os02g35770 | Homeobox associated leucine zipper; HB | OsHox7 | 0.18 | |
| 6 | LOC_Os02g13800 | HSF-type DNA binding domain containing protein; HSF | OsHsfC2a/OsHsf-05 | 0.25 | |
| 7 | LOC_Os02g40530 | MYB family transcription factor; MYB | MYB/OsMPS | −0.28 | |
| 8 | LOC_Os07g37210 | MYB family transcription factor; MYB | MYB/OsMyb7 | 0.17 | |
| 9 | LOC_Os11g47460 | MYB family transcription factor; MYB | MYB | 0.16 | |
| 10 | LOC_Os06g51260 | MYB family transcription factor; MYB-related | MYB/ OsLHY-like_chr.6 | 0.36 | |
| 11 | LOC_Os01g47370 | MYB family transcription factor; MYB-related | MYB | 0.20 | |
| 12 | LOC_Os08g06110 | MYB family transcription factor; MYB-related | MYB/OsCCA1/OsLHY/LHY-like_chr.8 | 0.33 | |
| 13 | LOC_Os07g26150 | MYB family transcription factor; MYB-related | MYB/Hsp40 | 0.18 | |
| 14 | LOC_Os04g41560 | B-box zinc finger family protein; Orphans | OsBBX11/OsSTO | 0.21 | |
| 15 | LOC_Os08g08120 | B-box zinc finger family protein; Orphans | OsBBX24 | 0.21 | |
| 16 | LOC_Os09g25060 | WRKY76; WRKY | OsWRKY76 | −0.31 | |
| 17 | LOC_Os03g08310 | ZIM domain containing protein; Tify | OsTIFY11a/OsJAZ9 | −0.31 | |
| 18 | LOC_Os02g35329 | RING-H2 finger protein ATL3F | ATL3F/OsELF5 | −0.28 | |
| 19 | LOC_Os07g43740 | Zinc finger, C3HC4 type domain containing protein | Zn finger | 0.20 | |
| Common gene | 1 | LOC_Os01g19330 | MYB family transcription factor; MYB | MYB | −0.394 |
| −0.36 | |||||
| Submergence responsive in IR64 | 1 | LOC_Os08g06120 | B3 DNA binding domain containing protein; ABI3VP1 | Similar to NGA1 (NGATHA1) | −0.26 |
| 2 | LOC_Os09g11480 | AP2 domain containing protein; AP2-EREBP | OsSUB1B/OsERF063/AP2/EREBP#166 | −0.41 | |
| 3 | LOC_Os09g11460 | AP2 domain containing protein; AP2-EREBP | OsSUB1C/ OsERF73/AP2/EREBP#122 | −0.23 | |
| 4 | LOC_Os07g47790 | AP2 domain containing protein; AP2-EREBP | OsERF067/AP2/EREBP#076 | −0.22 | |
| 5 | LOC_Os03g22170 | AP2 domain containing protein; AP2-EREBP | OsERF066/AP2/EREBP#030 | −0.31 | |
| 6 | LOC_Os01g54890 | Ethylene-responsive transcription factor 2; AP2-EREBP | OsERF922/AP2/EREBP#078 | −0.21 | |
| 7 | LOC_Os01g64020 | Transcription factor; bZIP | OsLG2/OsbZIP11 | −0.16 | |
| 8 | LOC_Os02g49230 | CCT/B-box zinc finger protein; C2C2-CO-like | OsBBX7 | −0.17 −0.18 −0.20 |
|
| 9 | LOC_Os01g74410 | MYB family transcription factor; MYB | OsMYB48–1 | −0.23 −0.32 |
|
| 10 | LOC_Os03g20090 | MYB family transcription factor; MYB | OsMYB2 | −0.18 | |
| 11 | LOC_Os08g43550 | MYB family transcription factor; MYB | OsMYB7 | −0.24 | |
| 12 | LOC_Os03g04900 | MYB family transcription factor; MYB | MYB | −0.20 | |
| 13 | LOC_Os11g05614 | No apical meristem protein; NAC | OsONAC7/ONAC17/ONAC30/OsNAC111 | −0.26 | |
| 14 | LOC_Os07g37920 | No apical meristem protein; NAC | OsSNAC/ONAC10/OsSTA199 | −0.18 | |
| 15 | LOC_Os03g04070 | No apical meristem protein; NAC | OsANAC34/ONAC22 | −0.21 | |
| 16 | LOC_Os01g66120 | No apical meristem protein; NAC | OsNAC6/SNAC2/NAC48 | −0.26 | |
| 17 | LOC_Os01g10580 | B-box zinc finger family protein; Orphans | OsBBX1/OsDBB3c | −0.22 | |
| 18 | LOC_Os12g10660 | B-box zinc finger family protein; Orphans | OsBBX30 | −0.21 | |
| 19 | LOC_Os02g05470 | CCT motif family protein; Orphans | OsCCT03/OsCMF3 | −0.43 | |
| 20 | LOC_Os07g07690 | PHD-finger domain containing protein; PHD | PHD | −0.43 | |
| 21 | LOC_Os05g49620 | WRKY19; WRKY | OsWRKY19 | −0.25 | |
| 22 | LOC_Os09g25070 | WRKY62; WRKY | OsWRKY62 | −0.33 | |
| 23 | LOC_Os02g08440 | WRKY71; WRKY | WRKY71/OsEXB1 | −0.25 | |
| 24 | LOC_Os09g30400 | WRKY90; WRKY | OsWRKY90 | −0.18 | |
| 25 | LOC_Os06g03580 | Zinc RING finger protein | OsBBI1 | −0.20 | |
| 26 | LOC_Os01g11460 | Zinc finger, C3HC4 type domain containing protein | Zn finger ATL2K | −0.20 |