Table 3.
Putative cis-elements identified in differentially expressed TF genes
| CATERGORY | MOTIF | IR64 down (#27 genes) | IR64-Sub1 down (#7 genes) | IR64-Sub1 up (#13 genes) |
|---|---|---|---|---|
| Hypoxia & light | GT1CONC4:C36SENSUS | 26 | 7 | 13 |
| ANAERO2CONSENSUS | 18 | 6 | 8 | |
| ANAERO1CONSENSUS | 16 | 5 | 8 | |
| ANAERO3CONSENSUS | 9 | 2 | 4 | |
| ANAERO4CONSENSUS | 2 | 0 | 1 | |
| Energy | PYRIMIDINEBOXOSRAMY1A | 24 | 7 | 10 |
| TATCCAOSAMY | 17 | 4 | 12 | |
| CGACGOSAMY3 | 16 | 7 | 8 | |
| TATCCAYMOTIFOSRAMY3D | 9 | 1 | 8 | |
| CAREOSREP1 | 23 | 5 | 7 | |
| SITEIIATCYTC | 21 | 5 | 10 | |
| SITEIIBOSPCNA | 1 | 0 | 0 | |
| SITEIIAOSPCNA | 0 | 0 | 1 | |
| SITEIOSPCNA | 2 | 0 | 2 | |
| AACACOREOSGLUB1 | 13 | 3 | 3 | |
| PROLAMINBOXOSGLUB1 | 5 | 1 | 5 | |
| GCN4OSGLUB1 | 8 | 1 | 0 | |
| ACGTOSGLUB1 | 4 | 2 | 3 | |
| GARE1OSREP1 | 4 | 4 | 1 | |
| GARE2OSREP1 | 0 | 3 | 2 | |
| BP5OSWX | 3 | 2 | 2 | |
| Transcription & cell devision | BIHD1OS | 25 | 7 | 12 |
| TATABOXOSPAL | 16 | 4 | 7 | |
| TATABOX1 | 2 | 1 | 0 | |
| E2FCONSENSUS | 13 | 1 | 10 | |
| E2F1OSPCNA | 2 | 0 | 0 | |
| LEAFYATAG | 3 | 0 | 4 | |
| WUSATAg | 6 | 0 | 1 | |
| Hormones and stress | DRECRTCOREAT | 17 | 6 | 7 |
| ACGTABREMOTIFA2OSEM | 9 | 4 | 5 | |
| ABREOSRAB21 | 6 | 4 | 2 | |
| IRO2OS | 3 | 1 | 0 |