Table 5.
Comparison of full-length transcript reconstruction between the four current assemblies and three previously published transcriptomes for Arctic charr [34], brown trout [35] and European whitefish [35]. The table shows the number (percent) of transcripts from each assembly that aligned to the NCBI protein database for Atlantic salmon (GCF_000233375.1)
| % Coverage against NCBI Atl. Salmon RefSeq Proteins | Atlantic salmon | Brown trout | Arctic charr | European whitefish | Magnanou et al. Arctic charr | PhyloFish Brown trout | PhyloFish European whitefish |
|---|---|---|---|---|---|---|---|
| 100 | 13,546 (37%) | 12,688 (36%) | 12,127 (37%) | 11,099 (33%) | 4411 (12%) | 19,624 (26%) | 5073 (7%) |
| 90–99 | 3072 (8%) | 3232 (9%) | 3220 (10%) | 3659 (11%) | 962 (3%) | 4574 (6%) | 1307 (2%) |
| 80–89 | 2279 (6%) | 2336 (7%) | 2102 (6%) | 2326 (7%) | 777 (2%) | 2306 (3%) | 582 (1%) |
| 70–79 | 2472 (7%) | 2439 (7%) | 2207 (7%) | 2306 (7%) | 933 (3%) | 2185 (3%) | 496 (1%) |
| 60–69 | 3026 (8%) | 2862 (8%) | 2587 (8%) | 2664 (8%) | 1142 (3%) | 2450 (3%) | 508 (1%) |
| 50–59 | 3458 (9%) | 3461 (10%) | 2966 (9%) | 3172 (9%) | 1514 (4%) | 2883 (4%) | 586 (1%) |
| 40–49 | 3936 (10%) | 3944 (11%) | 3565 (11%) | 3874 (11%) | 2097 (6%) | 3644 (5%) | 738 (1%) |
| 30–39 | 4716 (10%) | 4774 (13%) | 4352 (13%) | 4597 (14%) | 2587 (7%) | 4348 (6%) | 900 (1%) |
| 20–29 | 0 (0%) | 0 (0%) | 0 (0%) | 0 (0%) | 3211 (9%) | 4868 (6%) | 1017 (1%) |
| 10–19 | 0 (0%) | 0 (0%) | 0 (0%) | 0 (0%) | 3229 (9%) | 4752 (6%) | 908 (1%) |
| 0–9 | 0 (0%) | 0 (0%) | 0 (0%) | 0 (0%) | 1709 (5%) | 2932 (4%) | 567 (1%) |
| No hit | 0 (0%) | 0 (0%) | 0 (0%) | 0 (0%) | 12,118 (35%) | 20,782 (28%) | 62,019 (83%) |