Table 3.

In silico prediction of utilization of various metabolites as carbon sources and comparison with experimental data

Metabolite name	Compound	Metabolite formula	In silico simulation	Experimental data	References
2-ketogluconate	2ddglcn[e]	C6H9O6	+	+	Arahal et al. [1]
Acetate	ac[e]	C6H9O7	+	+	Arahal et al. [1]
d-Alanine	ala-d[e]	C3H7NO2	+	+	Arahal et al. [1]
l-Arginine	arg-l[e]	C6H15N4O2	+	+	Arahal et al. [1]
l-Asparagine	asn-l[e]	C4H8N2O3	+	+	Arahal et al. [1]
Choline	chol[e]	C5H14NO	−	+	Arahal et al. [1]
Citrate	cit[e]	C6H5O7	+	+	Arahal et al. [1]
Ectoine	ect-l[e]	C6H10N2O2	+	+	Vargas et al. [24]
Ethanol	etoh[e]	C2H6O	+	+	Arahal et al. [1]
Fructose 6-phosphate	f6p[e]	C6H11O9P	+	+	Data not shown
d-Fructose	fru[e]	C6H12O6	+	+	Arahal et al. [1]
Fumarate	fum[e]	C4H2O4	+	+	Arahal et al. [1]
d-Glucose	glc-d[e]	C6H12O6	+	+	Arahal et al. [1]
d-Gluconate	glcn[e]	C6H11O7	+	+	Pastor et al. [7]
l-Glutamine	gln-l[e]	C5H10N2O3	+	+	Arahal et al. [1]
l-Glutamate	glu-l[e]	C5H8NO4	+	+	Arahal et al. [1]
Glycine	gly[e]	C2H5NO2	+	+	Arahal et al. [1]
Glycine betaine	glyb[e]	C5H11NO2	−	+	Arahal et al. [1]
Glycerol	glyc[e]	C3H8O3	+	+	Arahal et al. [1]
5-hydroxyectoine	hdect[e]	C6H10N2O3	+	+	Vargas et al. [24]
d-Lactate	lac-d[e]	C3H5O3	+	−	Arahal et al. [1]
l-Lactate	lac-l[e]	C3H5O3	+	−	Arahal et al. [1]
Lysine	lys-l[e]	C6H15N2O2	−	+	Arahal et al. [1]
d-Malate	mal-d[e]	C4H4O5	+	+	Arahal et al. [1]
l-Malate	mal-l[e]	C4H4O5	+	+	Arahal et al. [1]
Maltose	malt[e]	C12H22O11	+	+	Arahal et al. [1]
d-Mannose	man[e]	C6H12O6	+	+	Arahal et al. [1]
l-Methionine	met-l[e]	C5H11NO2S	−	−	Arahal et al. [1]
Proprionate	ppa[e]	C3H5O2	+	+	Arahal et al. [1]
l-Proline	pro-l[e]	C5H9NO2	+	+	Arahal et al. [1]
d-Ribose	rib-d[e]	C5H10O5	+	+	Arahal et al. [1]
l-Serine	ser-l[e]	C3H7NO3	+	+	Arahal et al. [1]
Succinate	succ[e]	C4H4O4	+	+	Arahal et al. [1]
Trehalose	tre[e]	C12H22O11	+	+	Arahal et al. [1]
l-Valine	val-l[e]	C5H11NO2	−	−	Arahal et al. [1]

(+) Metabolized (−) not metabolized