Table 2.
Summary of lead SNPs significantly associated with the seed dormancy trait.
| Sig. SNPs | Allele | Chr. | Position (IRGSP v4) | P value | R2 (%) | Total R2 (%) | Known QTLs |
|---|---|---|---|---|---|---|---|
| seq-rs81 | T/C | 1 | 2,580,387 | 2.40E-04 | 3.5 | 34.9 | RM6902 (Marzougui et al., 2012) |
| seq-rs1000 | T/C | 2 | 21,983,557 | 9.35E-05 | 3.9 | RM525-RM318-RM240 (Xie et al., 2011) | |
| seq-rs1445 | G/A | 3 | 5,178,318 | 2.36E-04 | 3.5 | RM231 (Wan et al., 2006) | |
| seq-rs2896 | C/A | 6 | 10,198,431 | 7.96E-05 | 4.0 | RM5963 (Marzougui et al., 2012); RM549 (Gu et al., 2004) | |
| seq-rs3227 | G/A | 7 | 6,265,668 | 1.19E-06 | 5.8 | qSD7-1 (Gu et al., 2011); RM180 (Gu et al., 2004) | |
| seq-rs3527 | C/A | 7 | 24,461,489 | 1.93E-04 | 3.6 | FHS7.0 (Magwa et al., 2016); Sdr4 (Sugimoto et al., 2010); RM234 (Wan et al., 2006); RM346 (Gu et al., 2004) | |
| seq-rs3939 | A/G | 8 | 20,453,214 | 8.44E-05 | 4.0 | FHS8.1 (Magwa et al., 2016); RM531 (Gu et al., 2004) | |
| seq-rs4917 | A/G | 11 | 9,746,917 | 1.60E-04 | 4.1 | qSD-11 (Guo et al., 2004) | |
| seq-rs5598 | A/C | 12 | 7,132,922 | 1.07E-04 | 3.9 |