Table 2. Number of germline and somatic variants identified in three mesothelioma samples using whole genome sequencing.

The percentage of the germline variants identified in this study and reported in European population data from gnomAD are presented in brackets.

		SNV				Indels
		9869	11202	11398	All Patients	9869	11202	11398	All Patients
Germline	Identified in both platforms	3,033,980	3,146,317	3,092,543	9,272,840	193,359	190,436	185,905	569,700
		(96.8%)	(96.8%)	(96.8%)	(96.8%)	(91.7%)	(91.8%)	(92%)	(91.8%)
	HiSeq X Ten only	313,015	321,627	407,966	1,042,608	33,143	35,253	41,480	109,876
		(42.3%)	(42.3%)	(41.9%)	(42.1%)	(58.5%)	(58.4%)	(59.2%)	(58.7%)
	BGISEQ-500 only	161,128	118,336	92,050	371,514	7,025	6,931	5,789	19,745
		(4%)	(2.4%)	(4.1%)	(3.55%)	(13.8%)	(13.8%)	(11.6%)	(13.1%)
	Total	3,508,123	3,586,280	3,592,559	10,686,962	233,527	232,620	233,174	699,321
Somatic	Identified in both platforms	3,554	2,342	1,955	7,851	197	168	114	479
	HiSeq X Ten only	697	424	411	1,532	135	93	78	306
	BGISEQ-500 only	540	474	493	1,507	102	156	229	487
	Total	4,791	3,240	2,859	10,890	434	417	421	1,272