Table 4. Differentially expressed genes.
Comparison | Absolute mean fold change, all genesb | Mean fold change, DEGs | Total DEGs | Up-regulated | Down-regulated |
---|---|---|---|---|---|
BS/RIRa_Cold | 0.48 | 1.68 | 454 | 320 (70.5%) | 134 (29.5%) |
BS/RIRa_Warm | 0.49 | 1.70 | 1211 | 884 (73.0%) | 327 (27.0%) |
Cold/Warma_RIR | 0.36 | 2.60 | 46 | 18 (39.1%) | 28 (60.9%) |
Cold/Warma_BS | 0.45 | 1.52 | 402 | 121 (30.1%) | 281 (69.9%) |
a Set as control group in each comparison. Sample sizes: BS_Cold, 3; BS_Warm, 3; RIR_Cold, 3; RIR_Warm, 4.
b Gene expression data were fed into edgeR and filtered using the function rowSums(cpm(y)>2)≥3.