Table 7. GO enrichments for gene expression plasticity in BS and RIR chicken breeds.
| Biological process | #Genes | Cold/Warm_BS | Cold/Warm_RIR | ||
|---|---|---|---|---|---|
| +/−a | p valueb | +/−a | p valueb | ||
| regulation of nucleobase-containing compound metabolic process (GO:0019219) | 425 | − | 9.09E−08 | ||
| signal transduction (GO:0007165) | 796 | − | 2.67E−05 | ||
| developmental process (GO:0032502) | 607 | − | 7.18E−05 | ||
| regulation of transcription from RNA polymerase II promoter (GO:0006357) | 245 | − | 9.40E−05 | ||
| cell communication (GO:0007154) | 881 | − | 1.08E−04 | ||
| multicellular organismal process (GO:0032501) | 451 | − | 5.14E−03 | ||
| intracellular signal transduction (GO:0035556) | 388 | − | 5.44E−03 | ||
| single-multicellular organism process (GO:0044707) | 450 | − | 5.58E−03 | ||
| nervous system development (GO:0007399) | 198 | − | 8.09E−03 | ||
| cell differentiation (GO:0030154) | 133 | − | 8.68E−03 | ||
| nucleobase-containing compound metabolic process (GO:0006139) | 1160 | − | 1.40E−02 | ||
| steroid metabolic process (GO:0008202) | 47 | + | 1.56E−02 | ||
| cellular component movement (GO:0006928) | 151 | − | 3.72E−02 | ||
| system development (GO:0048731) | 326 | − | 4.79E−02 | ||
| response to stimulus (GO:0050896) | 787 | + | 1.08E−02 | ||
| immune response (GO:0006955) | 161 | + | 1.19E−02 | ||
a +/− Overrepresentation or underrepresentation.
b Bonferroni-corrected p value.