Table 4. Comparison of quality metrics between formalin-fixed paraffin embedded (FFPE) and fresh frozen (FF) matched samples (n=15).
Total reads | Percentage of reads mapped | Percentage of duplicates | Percentage of unique on target | Mean depth | |
---|---|---|---|---|---|
FFPE (n=15) | 8.7x107±3.4x106 | 95.5±2.2 | 54.5.2±9.2 | 47.6±2.3 | 785±333 |
FF (n=15) | 7.7x106 ±1.2x106 | 98.6±0.7 | 29.9±6.9 | 44.2±2.2 | 977±142 |
Data expressed as means ± standard deviation.