AVANA |
http://sourceforge.net/projects/avana/
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BioEdit |
http://www.mbio.ncsu.edu/bioedit/bioedit.html
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BLAST Web server |
http://blast.ncbi.nlm.nih.gov/
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BLAST+ |
http://tinyurl.com/259v9pq
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BLAST+ Databases |
ftp://ftp.ncbi.nlm.nih.gov/blast/db/
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BLAST+ Manual |
http://tinyurl.com/njr9xk6
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BLAST2GO |
https://www.blast2go.com/
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CDD |
http://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml
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ClustalX |
ftp://ftp.ebi.ac.uk/pub/software/clustalw2/
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HCV Immunology Database |
https://hcv.lanl.gov/content/immuno/immuno-main.html
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HIV Molecular Immunology Database |
https://www.hiv.lanl.gov/content/immunology/
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HIV Sequence Database |
https://www.hiv.lanl.gov/
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Immune Epitope Database |
http://www.iedb.org/
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Influenza Database |
http://research4.dfci.harvard.edu/cvc/flukb/
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Jalview |
http://www.jalview.org
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MHCBN |
http://crdd.osdd.net/raghava/mhcbn/
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MULTIPRED2 |
http://cvc.dfci.harvard.edu/multipred2/
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Muscle |
http://www.drive5.com/muscle/
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NCBI Entrez Databases |
http://www.ncbi.nlm.nih.gov
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NCBI Entrez Protein Database |
http://www.ncbi.nlm.nih.gov/protein
|
NCBI Entrez Taxonomy Database |
http://www.ncbi.nlm.nih.gov/taxonomy
|
NetCTL |
http://www.cbs.dtu.dk/services/NetCTL
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PEPVAC |
http://imed.med.ucm.es/PEPVAC/
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Pfam |
http://pfam.xfam.org/
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PROMALS3D |
http://prodata.swmed.edu/promals3d/promals3d.php
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Prosite |
http://www.expasy.org/prosite
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R |
http://www.r-project.org
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SYFPEITHI |
http://www.syfpeithi.de
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Tutorial 1: create BLAST searchable database |
http://tinyurl.com/4bl2qlv
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Tutorial 2: remove duplicate sequences |
http://tinyurl.com/yadxuqe
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Tutorial 3: generate tabbed alignment file (in.taln format) for input to AVANA |
http://tinyurl.com/6cjb4gg
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Tutorial 4: Notes on performing BLAST search with short queries |
http://tinyurl.com/4uw5nd9
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UniProt |
http://www.uniprot.org
|