Table 3.
Protein families (according to information in the Pfam database) identified amongst the upregulated transcripts in the pharynx (PX) of Anisakis simplex (s.s.) and Anisakis pegreffii. Pfam code and description, relative abundance of transcripts compared to the whole transcriptome (expressed as ratio between relative frequencies) and medial logFC are reported
| PFAM | PFAM description | PX enrichment | Median logFC |
|---|---|---|---|
| Anisakis simplex (s.s.) | |||
| PF00188 | Cysterin-rich secretory protein | 9.71 | 2.17 |
| PF01400 | Astacin peptidase M12A | 16.19 | 2.15 |
| PF01431 | Peptidase M13 | 11.88 | 2.48 |
| PF01433 | Peptidase M1 | 2.48 | 2.68 |
| PF11838 | Peptidase active site | 17.81 | 2.68 |
| PF00450a | Peptidase S10 | 3.23 | 2.42 |
| PF01549 | ShK toxin | 13.36 | 2.23 |
| PF00014a | Kunitz/Bovine pancreatic trypsin inhibitor domain | 4.97 | 2.65 |
| PF01683 | EB module | 18.59 | 2.55 |
| PF00031 | Cystatin | 13.36 | 2.06 |
| Anisakis pegreffii | |||
| PF00188 | Cysterin-rich secretory protein | 9.29 | 3.41 |
| PF01400 | Astacin peptidase M12A | 12.62 | 3.28 |
| PF01431 | Peptidase M13 | 13.59 | 3.02 |
| PF01433 | Peptidase M1 | 5.52 | 3.66 |
| PF01549 | ShK toxin | 8.83 | 2.75 |
| PF01683 | EB module | 58.88 | 2.98 |
| PF00063 | Myosin head motor domain | 11.39 | 2.71 |
| PF00031 | Cystatin domain (cysteine protease inhibitor) | 8.83 | 2.81 |
| PF06394 | Pepsine inhibitor like | 8.03 | 3.14 |
| PF14580 | Leucine-rich | 88.31 | 4.93 |
aPfam associated to transcripts detected in AS-PX only