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. Author manuscript; available in PMC: 2018 Dec 1.
Published in final edited form as: J Biomol NMR. 2017 Nov 2;69(4):215–227. doi: 10.1007/s10858-017-0149-y

Figure 1. The peak network density matrix and the methyl network matrix.

Figure 1

Given the simple network (A) composed by five peaks and their connections, which are depicted by nodes and segments, respectively, the adjacency matrix, P, is built by all the non- zero value peak-peak interactions (here all set to one for simplicity) and the ith-row/column corresponding to the ith-peak. The square of P is the peak network density matrix used to define the peak cluster surrounding each peak. For instance, the second row of P2 describes the network density surrounding the 2nd-peak. Higher number indicates denser network, i.e. larger amount of connections per peak. The P2 elements that describe the association between the 2nd-peak and 3rd-peak are high because both peaks are closely involved in the same network, i.e. both have connections with the 1st- and the 4th-peaks. It is worth noting that the values describing the networking between the 1st- and 4th-peaks, which are not directly connected, are not null because both are connected to the 2nd- and the 3rd-peak. Then the 4×4 sub-matrix (highlighted in grey) is the dense portion of this simple network. Conversely, the P2 row corresponding to the 5th-peak contains only low values and is not involved in high-density networking. Considering the simple methyl-methyl network (B) composed by five methyls and their connections, which are depicted by nodes and segments, respectively, the adjacency matrix, M, is built with all connections having non-zero value and the ith-row/column corresponding to the ith-methyl.