Table 1. An overview of the RNA-Seq data.
| Sample | Raw reads number | Clean reads number | Total mapped reads(%) | Unique match(%) | Multi-position match(%)a | Q20(%)b |
|---|---|---|---|---|---|---|
| C1-1 | 24135583 | 24119672 | 97.24 | 87.67 | 9.57 | 97.9 |
| C1-2 | 24135958 | 24119571 | 97.37 | 87.81 | 9.56 | 97.7 |
| C1-3 | 24136068 | 24117125 | 97.88 | 89.52 | 8.36 | 98.0 |
| C2-1 | 23140509 | 23122652 | 98.53 | 91.27 | 7.26 | 98.1 |
| C2-2 | 23039150 | 22981291 | 98.46 | 91.23 | 7.23 | 98.3 |
| C2-3 | 23235688 | 23203234 | 98.52 | 91.28 | 7.24 | 98.2 |
| C3-1 | 23151242 | 23116937 | 98.39 | 91.06 | 7.33 | 98.1 |
| C3-2 | 23112076 | 23070091 | 98.54 | 91.30 | 7.24 | 98.2 |
| C3-3 | 23223555 | 23165679 | 98.51 | 91.55 | 6.96 | 98.4 |
| C4-1 | 23183013 | 23145040 | 98.47 | 91.06 | 7.41 | 98.0 |
| C4-2 | 23015964 | 22966485 | 98.55 | 91.55 | 7.00 | 98.5 |
| C4-3 | 23716281 | 23658477 | 97.49 | 88.49 | 9.00 | 97.5 |
| D1-1 | 24134726 | 24113550 | 97.13 | 87.12 | 10.01 | 97.7 |
| D1-2 | 24135188 | 24119312 | 97.09 | 87.04 | 10.05 | 97.7 |
| D1-3 | 23386471 | 23370924 | 98.48 | 90.87 | 7.61 | 98.1 |
| D2-1 | 23075487 | 23032938 | 98.39 | 91.04 | 7.35 | 98.2 |
| D2-2 | 22949522 | 22901119 | 98.41 | 91.19 | 7.22 | 98.4 |
| D2-3 | 22792986 | 22761826 | 98.41 | 90.99 | 7.42 | 98.3 |
| D3-1 | 23498245 | 23484291 | 98.46 | 91.29 | 7.17 | 98.2 |
| D3-2 | 23063140 | 23021956 | 98.41 | 91.04 | 7.37 | 98.0 |
| D3-3 | 23135529 | 23089960 | 98.39 | 90.99 | 7.4 | 98.1 |
| D4-1 | 23918095 | 23865044 | 97.73 | 89.09 | 8.64 | 97.2 |
| D4-2 | 23840098 | 23798619 | 97.4 | 88.36 | 9.04 | 97.0 |
| D4-3 | 23814255 | 23781964 | 97.7 | 89.14 | 8.56 | 97.6 |
Notes
a Total Mapped Reads (%) = Unique Match (%) + Multi-position Match (%), are the percentages of clean reads align to reference genome.
b Q20 (%) are the percentages of reads with Phred qualities scores over than 20.