Table 3.
Characteristics and polymorphism of loci gene of Pseudomonas aeruginosa
| Allele | Length | Haplotype | Polymorphic sites | π | θ | G+C | dN | dS | dN/dS |
|---|---|---|---|---|---|---|---|---|---|
| acsA | 390 | 24 | 18 | 0.01258 | 0.01236 | 0.6871 | 0 | 0.05066 | 0 |
| aroE | 498 | 16 | 21 | 0.01466 | 0.01271 | 0.7044 | 0.02188 | 0.01307 | 1.6741 |
| guaA | 373 | 20 | 14 | 0.00889 | 0.01058 | 0.6568 | 0.0036 | 0.02389 | 0.1507 |
| mutL | 442 | 16 | 18 | 0.00792 | 0.0123 | 0.6715 | 0.00769 | 0.01326 | 0.5799 |
| nuoD | 366 | 15 | 13 | 0.00775 | 0.01092 | 0.6324 | 0.00471 | 0.02904 | 0.1621 |
| ppsA | 370 | 14 | 14 | 0.0087 | 0.0119 | 0.6676 | 0.01221 | 0 | n.a |
| trpE | 443 | 21 | 23 | 0.01403 | 0.01506 | 0.6616 | 0.01771 | 0.00761 | 2.3272 |
| Concatenate | 2882 | 68 | 120 | 0.00748 | 0.00877 | 0.6709 | 0.01318 | 0.00548 | 2.4051 |
Notes: The G+C content was calculated by Geneious 9.1. Haplotype, polymorphic sites, average number of synonymous (dS) and nonsynonymous sites (dN), average nonsynonymous/synonymous ratio (dN/dS), the nucleotide diversity per site (π), and the average number of nucleotide differences per site (θ) were found using DnaSP 5.0.