Table 2. Chromosome-wide distribution of polymorphic founder alleles that segregated in the MAGIC population.
| MT | FT | MOnly | FOnly | M ∩ F | *(M ∩ F)/FT | |
|---|---|---|---|---|---|---|
| Chr 1 | 7,279 | 7,280 | 1,939 | 1,940 | 5,340 | 0.73 |
| Chr 2 | 6,510 | 6,231 | 1,928 | 1,649 | 4,582 | 0.74 |
| Chr 3 | 6,315 | 6,396 | 1,632 | 1,713 | 4,683 | 0.73 |
| Chr 4 | 5,379 | 5,255 | 1,579 | 1,455 | 3,800 | 0.72 |
| Chr 5 | 3,718 | 4,180 | 770 | 1,232 | 2,948 | 0.71 |
| Chr 6 | 4,517 | 4,506 | 1,066 | 1,055 | 3,451 | 0.77 |
| Chr 7 | 3,070 | 3,129 | 813 | 872 | 2,257 | 0.72 |
| Chr 8 | 3,375 | 3,689 | 822 | 1,136 | 2,553 | 0.69 |
| Chr 9 | 3,993 | 3,942 | 991 | 940 | 3,002 | 0.76 |
| Chr 10 | 4,171 | 3,937 | 1,280 | 1,046 | 2,891 | 0.73 |
| Summary | 48,327 | 48,545 | 12,820 | 13,038 | 35,507 | 0.73 |
MT and FT refer to the respective total number of multi-parent advanced generation intercross (MAGIC) and founder alleles that were polymorphic at minor allele frequency > 0.01; MOnly and FOnly are polymorphic alleles that were unique to the MAGIC and founders, respectively; and M ∩ F are the alleles that are shared between the MAGIC and the founders. * indicates the ratio of shared alleles to total founder alleles, depicting the proportion of founder alleles that segregated in the MAGIC population. Chr, chromosome.