Table 5.
Taxonomic level reached for 41 bacterial strains using the Ribosomal Database Project SequenceMatch (RDP), NCBI blastn (BLAST), and Ion Torrent's Ion Reporter Metagenomics workflow (IR) algorithms for 41 bacterial strains
Taxonomic level | Analysis method | ||
---|---|---|---|
RDP | BLAST | IR | |
Kingdom | 0 | 0 | 0 |
Phylum | 0 | 0 | 0 |
Class | 0 | 0 | 0 |
Order | 0 | 0 | 0 |
Family | 0 | 1 | 3 |
Genus | 1 | 1 | 9 |
Species | 40 | 39 | 29 |
Bold was used to visually distinguish the values from those that are zero.