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. 2018 Jan 12;9:3. doi: 10.1186/s13326-017-0169-2

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© The Author(s). 2018

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 2 — Ontofox retrieval of an NCBITaxon subset. Input data includes 3 species of organisms (human, mouse, and rat) and Ontofox settings. The input data and settings can be entered via web-based forms (a). The Ontofox results can be shown using Protégé (b-d). Different results may appear based on different settings: The setting “IncludeNoIntermediates” implements MIREOT (b). The setting “includeComputedIntermediates” extracts computed intermediates which that are closest ancestors of more than one low level source terms (c). The setting “includeAllIntermediates” outputs all possible intermediates