Table 2.
Summary of transcriptome and methylome data.
| MCF10A | MCF7 | T47D | MDA231 | MDA436 | HCC1937 | SUM149 | SUM1315 | SL | SB | ||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Transcriptome (RPKM) | Mean | 3.08 | 2.11 | 2.12 | 2.87 | 2.07 | 2.99 | 2.58 | 2.24 | 1.91 | 2.01 |
| Median | 0.55 | 0.53 | 0.58 | 0.57 | 0.53 | 0.60 | 0.58 | 0.54 | 0.48 | 0.49 | |
| 3rd quartile | 1.56 | 1.47 | 1.58 | 1.76 | 1.45 | 1.82 | 1.63 | 1.46 | 1.37 | 1.43 | |
| Maximum | 1213.98 | 1033.06 | 645.80 | 774.17 | 982.73 | 975.89 | 965.45 | 517.51 | 453.00 | 664.35 | |
| Standard deviation | 21.12 | 11.91 | 9.980 | 14.65 | 12.31 | 14.55 | 15.56 | 11.65 | 8.33 | 9.43 | |
| Methylome (RPM) | Mean | 0.95 | 0.89 | 0.95 | 1.53 | 1.34 | 0.88 | 0.83 | 0.75 | 0.92 | 0.76 |
| Median | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | |
| 3rd quartile | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | |
| Maximum | 17.56 | 37.71 | 57.87 | 42.33 | 70.12 | 27.30 | 39.14 | 20.69 | 52.60 | 42.95 | |
| Standard deviation | 1.77 | 2.08 | 2.70 | 3.06 | 3.90 | 1.99 | 2.33 | 1.61 | 2.33 | 2.18 |
Means, medians, 3rd quartile, maximum values and standard deviations of the normalized data RPKM (transcriptome) and RPM (methylome) are presented for each cell line.