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. 2017 Aug 4;45(16):9272–9289. doi: 10.1093/nar/gkx696

Table 1. Definitions for distinct modification types and quantitative MS measurements used in the study.

Modification type Meaning Examples
Single PTM Specified aa residue within H3 N-terminal tail is modified by a given PTM; other aa residues are unmodified H3K9me2: H3K9 is dimethylated; other H3 N-terminal tail aa residues are unmodified
Individual PTM Specified aa residue within H3 N-terminal tail is modified by a given PTM; other aa residues can either be modified or unmodified H3K9me2: H3K9 is dimethylated; other H3 N-terminal tail aa residues can either be modified or unmodified
Combinatorial PTM Specified aa residues within H3 N-terminal tail are modified by a given PTM(s); other aa residues are unmodified H3K9me2K27me3: H3K9 and H3K27 are di- and trimethylated, respectively; other H3 N-terminal tail aa residues are unmodified
Binary PTM Two specified aa residues within H3 N-terminal tail are modified by given a PTM(s); other aa residues can either be modified or unmodified H3K9me2K27me3: H3K9 and H3K27 are di- and trimethylated, respectively; other H3 N-terminal tail aa residues can either be modified or unmodified
Quantitative MS measurement Meaning Examples
Relative abundance (RA) of PTM on total H3 Proportion (%) of all H3 N-terminal tails carrying a given PTM It is important to distinguish the difference between the RAs of single and individual PTMs:
RA of PTM on H3.3 (H3.1/2) Proportion (%) of H3.3 (H3.1/2) N-terminal tails carrying a given PTM RA of a single PTM H3K9me2 is 1% means that 1% of all H3 N-terminal tails is modified by K9me2 with NO other modifications present on them.
RA of an individual PTM H3K9me2 is 1% means that 1% of all H3 N-terminal tails is modified by K9me2 alone or in combination with any other H3 PTM(s).