Modification type
|
Meaning
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Examples
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Single PTM |
Specified aa residue within H3 N-terminal tail is modified by a given PTM; other aa residues are unmodified
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H3K9me2: H3K9 is dimethylated; other H3 N-terminal tail aa residues are unmodified |
Individual PTM |
Specified aa residue within H3 N-terminal tail is modified by a given PTM; other aa residues can either be modified or unmodified
|
H3K9me2: H3K9 is dimethylated; other H3 N-terminal tail aa residues can either be modified or unmodified |
Combinatorial PTM |
Specified aa residues within H3 N-terminal tail are modified by a given PTM(s); other aa residues are unmodified
|
H3K9me2K27me3: H3K9 and H3K27 are di- and trimethylated, respectively; other H3 N-terminal tail aa residues are unmodified |
Binary PTM |
Two specified aa residues within H3 N-terminal tail are modified by given a PTM(s); other aa residues can either be modified or unmodified
|
H3K9me2K27me3: H3K9 and H3K27 are di- and trimethylated, respectively; other H3 N-terminal tail aa residues can either be modified or unmodified |
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Quantitative MS measurement
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Meaning
|
Examples
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Relative abundance (RA) of PTM on total H3 |
Proportion (%) of all H3 N-terminal tails carrying a given PTM |
It is important to distinguish the difference between the RAs of single and individual PTMs: |
RA of PTM on H3.3 (H3.1/2) |
Proportion (%) of H3.3 (H3.1/2) N-terminal tails carrying a given PTM |
RA of a single PTM H3K9me2 is 1% means that 1% of all H3 N-terminal tails is modified by K9me2 with NO other modifications present on them. |
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RA of an individual PTM H3K9me2 is 1% means that 1% of all H3 N-terminal tails is modified by K9me2 alone or in combination with any other H3 PTM(s). |