Table 1.
Primer sequences used in MSP
| Gene name | Primer name | Primer sequence | Band size (bp) |
|---|---|---|---|
| Dync1i1 | Dync1i1-MF | TATGAAGAAAAATATAGTAAGATACGG | 232 |
| Dync1i1-MR | ACGAACATTTCACATTTCGAA | ||
| Dync1i1-UF | TTTATGAAGAAAAATATAGTAAGATATGG | 235 | |
| Dync1i1-UR | CACAAACATTTCACATTTCAAA | ||
| Slc1a4 | Slc1a4-MF | ATAAATTATTTTTTTTATGTTACGG | 216 |
| Slc1a4-MR | TTAATAATACATACCTATAATCCGAC | ||
| Slc1a4-UF | ATAAATTATTTTTTTTATGTTATGG | 216 | |
| Slc1a4-UR | TTAATAATACATACCTATAATCCAAC | ||
| Xrcc6bp1 | Xrcc6bp1-MF | GTTAATGTGAGAGTTAGAATAGTATAGGAC | 110 |
| Xrcc6bp1-MR | AATTAATACAATATTTCGATACCGAT | ||
| Xrcc6bp1-UF | GTTAATGTGAGAGTTAGAATAGTATAGGAT | 110 | |
| Xrcc6bp1-UR | AATTAATACAATATTTCAATACCAAT | ||
| TTR | TTR-MF | GGAATTTAAGATACGGTTTATATCGA | 106 |
| TTR-MR | AACACTCTTTCGAACATACTCGAC | ||
| TTR-UF | AGGAATTTAAGATATGGTTTATATTGA | 108 | |
| TTR-UR | AAACACTCTTTCAAACATACTCAAC |
Primer sequences are started from 5′ (left) to 3′ (right)
MF forward primer sequence for the methylated reactions, MR reverse primer sequence for the methylated reactions, UF forward primer sequence for the unmethylated reactions, UR reverse primer sequence for the unmethylated reactions