. 2018 Jan 9;8:2654. doi: 10.3389/fmicb.2017.02654

Table 4.

Quorum-repressed genes.

Locus tag^a	Name^a	Annotation^a	Early stationary phase fold change^b
			QS	*qteE*	*qslA*	*qteE qslA*
PA0045		hypothetical protein	−2.2	NC	−2.9	−3.3
PA0047		hypothetical protein	−2.3	NC	−1.9	−2.3
PA0592	ksgA	rRNA (adenine-N6,N6)-dimethyltransferase	−1.6	NC	NC	−1.4
PA0944	purN	phosphoribosylaminoimidazole synthetase	−1.8	NC	NC	NC
PA1302		probable heme utilization protein precursor (hxuC)	−2.1	NC	NC	NC
PA1303		signal peptidase	−2.4	NC	NC	NC
PA1542		hypothetical protein	−1.8	NC	1.7	1.9
PA1580	gltA	citrate synthase (cisY)	−1.6	NC	NC	NC
PA1595		hypothetical protein	−1.9	NC	NC	NC
PA1757	thrH	homoserine kinase	−2.0	NC	NC	NC
PA1791		hypothetical protein	−1.9	NC	−2.1	−3.1
PA2583		probable sensor/response regulator hybrid	−1.7	NC	NC	NC
PA2665	fhpR	Transcriptional activator of P. aeruginosa flavohemoglobin, FhpR (ygaA)	−1.7	NC	NC	NC
PA2770		hypothetical protein	−1.7	NC	NC	2.3
PA2780	bswR	bacterial swarming regulator BswR	−1.5	NC	NC	NC
PA2930		probable transcriptional regulator	−2.4	NC	NC	NC
PA2950	pfm	proton motive force protein, PMF	−1.6	NC	NC	NC
PA2964	pabC	4-amino-4-deoxychorismate lyase	−1.5	NC	NC	NC
PA2970	rpmF	50S ribosomal protein L32	−2.1	NC	NC	NC
PA2998	nqrB	Na+-translocating NADH:ubiquinone oxidoreductase subunit Nrq2	−1.8	NC	NC	NC
PA3079		hypothetical protein	−1.9	NC	NC	NC
PA3111	folC	folylpolyglutamate synthetase	−1.6	NC	NC	NC
PA3174		probable transcriptional regulator	−1.9	−2.3	−2.7	−3.2
PA3268		probable TonB–dependent receptor	−3.4	NC	NC	NC
PA3284		hypothetical protein	−3.3	−5.5	−7.4	−8.8
PA3362		hypothetical protein (amiS)	−2.3	8.0	12.4	7.3
PA3473		hypothetical protein	−1.7	NC	NC	NC
PA3609	potC	polyamine transport protein PotC	−2.0	NC	NC	NC
PA3820	secF	secretion protein SecF	−2.5	NC	NC	NC
PA3823	tgt	queuine tRNA-ribosyltransferase	−1.8	NC	NC	−1.8
PA3827	lptG	Lipopolysaccharide export system permease protein LptG (yjgQ)	−1.5	NC	NC	NC
PA3979		hypothetical protein	−1.6	NC	NC	NC
PA4045		conserved hypothetical protein (btuF; yadT)	−1.7	NC	NC	NC
PA4046		hypothetical protein	−1.5	NC	NC	NC
PA4375	mexW	Resistance-Nodulation-Cell Division (RND) multidrug efflux transporter MexW	−1.7	NC	NC	NC
PA4479	mreD	rod shape-determining protein MreD	−2.8	NC	NC	NC
PA4519	speC	ornithine decarboxylase	−1.8	1.9	2	3.2
PA4562		conserved hypothetical protein (mviN)	−1.7	NC	NC	NC
PA4569	ispB	octaprenyl-diphosphate synthase (cel)	−1.8	NC	NC	−1.9
PA4628	lysP	lysine-specific permease	−1.7	NC	NC	NC
PA4630		hypothetical protein	−2.0	−1.6	−2.6	−2.5
PA4672		peptidyl-tRNA hydrolase (pth)	−2.1	NC	NC	NC
PA4757		conserved hypothetical protein (yeaS)	−1.5	NC	NC	−1.4
PA4840		conserved hypothetical protein (yciH)	−1.6	NC	NC	NC
PA5072		probable chemotaxis transducer	−1.5	NC	NC	NC
PA5081		hypothetical protein	−2.0	−1.8	NC	−1.5
PA5117	typA	regulatory protein TypA (bipA)	−1.7	NC	NC	NC
PA5139		hypothetical protein	−2.2	NC	NC	−3.3
PA5156		hypothetical protein	−1.8	NC	NC	NC
PA5167	dctP	DctP	−3.9	NC	NC	NC
PA5168	dctQ	DctQ	−4.3	NC	NC	NC
PA5169	dctM	DctM	−4.9	NC	NC	NC
PA5194		hypothetical protein	−1.7	NC	NC	NC
PA5250		conserved hypothetical protein	−1.7	NC	NC	NC
PA5251		hypothetical protein	−1.7	NC	NC	NC
PA5320	coaC	Phosphopantothenoylcysteine synthase/(R)-4′-phospho-N-pantothenoylcysteine decarboxylase (coaB; coaBCI; dfp)	−1.4	NC	NC	−1.3
PA5361	phoR	two-component sensor PhoR	−1.6	NC	NC	NC
PA5492		conserved hypothetical protein (ysxC; yihA)	−1.9	NC	NC	NC
PA5560	atpB	ATP synthase A chain (papD, uncB)	−1.8	NC	NC	−2.4

Locus tags, gene names, and gene annotations from the Pseudomonas Genome Database (http://www.pseudomonas.com).

QS represents the WT vs. lasR rhlR comparison, while all anti-activator mutant comparisons are vs. the wild-type. BOLD denotes genes of the quorum-repressed regulon in early stationary phase also differentially expressed in log phase. Negative values indicate repression, positive values indicate activation. NC, no change.