Table 2.
Associated single nucleotide polymorphisms (SNPs) and the nearest genes for plant height traits of flax.
| Model | Environment | SNP position (bp) | scaffold | Location | P-value | Nearest gene | Distance to SNP (kb) |
|---|---|---|---|---|---|---|---|
| GLM | 2015HRB | scaffold112_114241 | scaffold112 | 114241 | 7.43E-07 | Calcineurin B-like protein (CBP) | upstream 0.27 |
| scaffold1491_318496 | scaffold1491 | 318496 | 1.91E-07 | PI-PLC X domain-containing protein (PI-PLC X) | interior | ||
| scaffold31_1800846 | scaffold31 | 1800846 | 6.65E-07 | Squamosa promoter-binding-like protein (SPP) | downstream 0.642 | ||
| scaffold344_309662 | scaffold344 | 309662 | 1.11E-07 | UDP-glycosyltransferase 1 (UDP) | downstream 4.558 | ||
| scaffold51_1349321 | scaffold51 | 1349321 | 8.08E-07 | Pectate lyase (PL) | downstream 8.566 | ||
| scaffold59_572553 | scaffold59 | 572553 | 1.06E-07 | PPR repeat family (PPR) | upstream 0.52 | ||
| 2016HRB | scaffold156_641874 | scaffold156 | 641874 | 7.27E-07 | Pectate lyase superfamily protein (PSP) | downstream 0.51 | |
| 2016LX | scaffold147_367986 | scaffold147 | 367986 | 1.10E-07 | Ubiquitin family (UF) | upstream 8.3 | |
| scaffold859_123972 | scaffold859 | 123972 | 4.22E-07 | cellulose synthase (CS) | downstream 0.56 | ||
| MLM | 2015HRB | scaffold344_309662 | scaffold344 | 309662 | 1.11E-07 | UDP-glycosyltransferase (UDP) | downstream 4.558 |
| scaffold51_1349321 | scaffold51 | 1349321 | 8.08E-07 | Pectate lyase (PL) | downstream 8.566 |