Table 5.

Associated single nucleotide polymorphisms (SNPs) and the nearest genes for the number of fruits trait of flax.

Model	Environment	SNP position (bp)	scaffold	Location	P-value	Nearest gene	Distance to SNP (kb)
GLM	2015HRB	scaffold137_111000	scaffold137	111000	6.28E-08	Transmembrane amino acid transporter protein (TATP)	upstream 0.65
		scaffold225_427119	scaffold225	427119	1.91E-07	Linum usitatissimum clone Contig1437 microsatellite sequence	downstream 1.53
		scaffold687_121617	scaffold687	121617	7.22E-07	Linum usitatissimum clone LU0019C12 mRNA sequence	upstream 0.36
	2016HRB	scaffold156_761294	scaffold156	761294	2.76E-07	Lus10040627.BGIv1.0	downstream 0.54
		scaffold413_1116527	scaffold413	1116527	2.97E-07	Fumarate hydratase (FH)	interior
	2016LX	scaffold137_111000	scaffold137	111000	6.28E-08	Transmembrane amino acid transporter protein (TATP)	upstream 0.65
		scaffold225_427119	scaffold225	427119	1.91E-07	Linum usitatissimum clone Contig1437 microsatellite sequence	downstream 1.53
		scaffold156_1203677	scaffold156	1203677	1.14E-12	Ribosomal protein (RP)	upstream 1.14
		scaffold413_388319	scaffold413	388319	1.03E-06	Chitinase class I (CCI)	upstream 1.02
MLM	2015HRB	scaffold137_111000	scaffold137	111000	6.28E-08	Transmembrane amino acid transporter protein (TATP)	upstream 0.65
		scaffold225_427119	scaffold225	427119	1.91E-07	Linum usitatissimum clone Contig1437 microsatellite sequence	downstream 1.53
		scaffold687_123666	scaffold687	123666	3.22E-07	Linum usitatissimum clone LU0019C12 mRNA sequence	interior
	2016LX	scaffold137_111000	scaffold137	111000	6.28E-08	Transmembrane amino acid transporter protein (TATP)	upstream 0.65
		scaffold225_427119	scaffold225	427119	1.91E-07	Linum usitatissimum clone Contig1437 microsatellite sequence	downstream 1.53
		scaffold156_1203677	scaffold156	1203677	1.14E-12	Lus10040728.BGIv1.0	upstream 1.14
		scaffold413_388319	scaffold413	388319	1.03E-06	Lus10028377.BGIv1.0	upstream 1.02