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. 2018 Jan 14;24:29–42.

Table 2. SNPs with genome-wide suggestive evidence of linkage from multipoint analysis.

CHR HLOD rsID POS MAF FUNCTION GENE
9q33.1
3.14
rs1158810
121,809,519
0.4631
intergenic
TLR4,BRINP1
9q33.1
3.07
rs1009470
122,289,187
0.4688
intergenic
BRINP1,MIR147A
9q33.1
2.97
rs16909449
122,861,297
0.4799
intergenic
BRINP1,MIR147A
9q33.2
2.78
rs17611
123,769,200
0.4927
exonic
C5
9q33.1
2.71
rs1927321
121,066,417
0.4765
intergenic
TLR4,BRINP1
9q33.2
2.67
rs7871736
124,650,611
0.4052
intronic
TTLL11
9q33.3
2.48
rs4838334
128,843,105
0.4248
intergenic
PBX3,LOC101929116
10q26.11
2.35
rs7099523
120,493,700
0.4998
intronic
CACUL1
10q26.12
2.33
rs746832
122,348,065
0.4615
ncRNA_intronic
MIR5694
10q26.11
2.31
rs185020036
120,095,773
0.0061
exonic
FAM204A
9q33.2
2.30
rs1536929
125,391,369
0.4291
exonic
OR1B1
9q33.3
2.24
rs10987504
129,613,454
0.466
intergenic
ZBTB43),ZBTB34
10q26.11
2.24
rs1419138
119,731,281
0.4295
intergenic
EMX2,RAB11FIP2
10q26.12
2.22
rs2289337
122,649,482
0.1519
exonic
WDR11
10q26.11
2.14
rs1925283
119,533,345
0.4789
intergenic
EMX2),RAB11FIP2
10q26.12
2.10
rs4752384
121,871,353
0.3317
intergenic
MIR4682,PPAPDC1A
10q26.13
2.07
rs11598592
123,043,389
0.4611
intergenic
MIR5694),FGFR2
9q33.3
2.05
rs4130590
130,107,964
0.4424
intronic
GARNL3
9q33.1
2.02
rs10817896
119,232,655
0.4729
intronic
ASTN2
10q26.13
2.00
rs2672592
124,230,750
0.4857
intronic
HTRA1
9q34.11
1.93
rs2275260
131,285,955
0.4639
exonic
GLE1
10q26.13 1.89 rs2981579 123,337,335 0.4623 intronic FGFR2

Table displaying the genome-wide significant and suggestive signals from the multipoint linkage analysis sorted by HLOD. The genome-wide significance threshold is 3.3 and the genome-wide suggestive threshold is 1.9, as recommended by Lander and Kruglyak. CHR=chromosomal region, HLOD=heterogeneity LOD score, POS=position in basepairs of each SNP, MAF=minor allele frequency as calculated from the data set, FUNCTION=functional annotation of the SNP, GENE=genic location of the SNP or closest genes in the case of intergenic SNPs. Annotations performed by ANNOVAR.