Table 1.
Locus | Primer sequence (5′ - 3′) | Repeat motif | Size (bp) | Label | Annealing Temp. (°C) |
---|---|---|---|---|---|
5A26216 | F: AAGCTTCAGAAGGTGGCACT R: CGTGCTGAGGGATTAAGGAA |
(AC)18 | 104–122 | FAM | 58 |
5A26261 | F: CTCATATGGGGCCAACAAAC R: CCATCATGAAAGGGTGCTCT |
(GT)11 | 146–157 | FAM | 58 |
5A5305-1 | F: GGGGAGGAAGTATAGGTGTGC R: AATCACACCTCTCCCACAGG |
(TTTTTG)9 | 194–238 | FAM | 58 |
5A5111 | F: GAGAAGAACGGTGGATGAGC R: CCAGTGCTCTTTCCTTTTGC |
(CA)9 | 246–267 | FAM | 58 |
5A26254 | F: TGTGCCAATACCTCACTCCA R: CATCCTCCCACCAGCATTAT |
(TTTC)8(CT)23 | 134–174 | VIC | 58 |
5A266113 | F: CATGGCAACCAAAACCACTT R: GGCTTTGCTGTGCTACCTGT |
(AC)11 | 190–213 | VIC | 58 |
5A265175 | F: CGAATGTGACCAAAAGAACAG R: CATGATTTGAGGGTCACCAA |
(CA)16 | 217–240 | VIC | 58 |
5A5279 | F: ATGAACCTGAATGGGAAGGA R: ATGCTGATGCCAGTGTTCTG |
(AAAAG)8(AAGAG)11(AAAAGAG)7 | 252–369 | VIC | 58 |
5A5397 | F: TCAGAATACTGATTGCATTTGTCC R: TGCTGCATAAAGACACGGAG |
(ATTT)12 | 120–158 | PET | 58 |
5A265141 | F: GTGGCATGCTTCACTCAGAA R: AAGCATGCAAAACAGACCAA |
(CT)6(GT)12 | 173–199 | PET | 58 |
5A26681 | F: TAGGTGCTCCAATGAACTCAA R: TGAGCTTGTTTGCTTGTTGG |
(GAGAA)37 | 218–367 | PET | 58 |
5A265151 | F: TGTATTTGGGGCAAATGTGA R: TCCGGTCTGTAAAGTCAGACAA |
(AG)10 | 157–180 | NED | 58 |
5A265164 | F: TGCTGAAATGGTCAACATCC R: TCTTCTATCTCCTCCCCCTGA |
(TA)9 | 213–229 | NED | 58 |
5A26648 | F: GGATTTATCTGTGGGATTTATCTGA R: GTTGGTTTGGATTTGCTGCT |
(GAGAA)20 | 245–376 | NED | 58 |
Ans13 | F: GCTAAGGTTGTTGCATTGATC R: TAGAGGCACAGACAAAGCAGA |
(CA)9 | 127–161 | FAM | 53 |
Ans17 | F: ACAAATAACTGGTTCTAAGCAC R: AGAGGACTTCTATTCATAAATA |
(TA)3 (CA)6C(CA)3(TA)3 | 111–140 | FAM | 53 |
Ans21 | F: TTCAGCATAAGTTCAGGCATG R: TATGGGTTAGTGTTCTTCTCA |
(AT)2(GT)5(AT)2(GT)6 | 173–189 | FAM | 53 |
Aph19b | F: ATGGAGCAAGCAATCGTCTG R: AGCGTGAGGGTCTGCAGA |
(CA)8 | 229–240 | FAM | 53 |
Aalμ1b | F: CATGCGTGTTTAAGGGGTAT R: TAAGACTTGCGTGAGGAATAG |
(GT)15 | 66–90 | VIC | 53 |
Ans02 | F: TTCTGTGCAGGGGCGAGTT R: AGGGAACCGATCACGACATG |
(AG)17 | 196–232 | VIC | 53 |
Ans25 | F: CACTTATTAATGGCACTTGAAA R: GTTCTCTTGTCACAACTGGA |
(GT)18 | 251–269 | VIC | 53 |
FAM, 6-fluorescein amidite.