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. 2017 Aug 10;25(12):2661–2675. doi: 10.1016/j.ymthe.2017.08.003

Table 1.

Analysis of Specific and Collateral Packaging of rAAV5-UF26 in HEK293 and Sf9 Cells

Reference Genome NGS Library
PCR-free PCR
HEK293

UF26 cassette 96.50 95.24
96.59 95.38
Vector backbone 2.58 3.49
2.52 3.39
pHelper 0.04 0.04
0.04 0.04
rep2cap5 0.71 1.00
0.68 0.97
H. sapiens 0.17 0.22
0.17 0.22

Sf9

UF26 cassette 99.38 99.15
99.39 99.20
Vector backbonea 0.30 0.41
0.30 0.41
Baculovirus/Bacmidb 0.29 0.39
0.27 0.34
rep2/cap5c 0.014 0.003
0.015 0.003
S. frugiperda 0.025 0.040
0.025 0.040

Relative content of DNA in purified virions is shown as percentage of total sequences identified by NGS analysis. All NGS analyses were conducted in duplicates shown for each reference genome in two parallel rows. See also Figures S5–S7 and Tables S4 and S5.

a

Including GenR.

b

AcMNPV(strain_E2), miniF, LacZ, and KanR.

c

pIR-VPm11-hR2-900, pIR-rep78polHind-hr2.