Skip to main content
. 2018 Jan 11;8:2670. doi: 10.3389/fmicb.2017.02670

Table 1.

Summary statistics of the 16S rRNA metagenome sequencing.

Host species Habitat Sample Reads for cleaning
OTUs ACE (95% CI) Cha01 (95% CI) Shannon (95% CI) Simpson (95% CI)
1st 2nd Final
F. limnocharis Forest AN1 17,442 13,700 12,380 540 640.45 (609.75-684.66) 653.55 (611.58-720.15) 4.878 (4.850-4.907) 0.024 (0.022-0.025)
F. limnocharis Forest AN2 17,343 15,656 14,737 291 361.32 (334.88-403.68) 370.88 (334.72-436.92) 3.552 (3.522-3.583) 0.088 (0.085-0.091)
F. limnocharis Forest AN3 37,167 34,860 33,441 458 524.32 (501.48-559.15) 541.72 (507.34-600.06) 3.420 (3.398-3.442) 0.102 (0.100-0.104)
F. limnocharis Farmland AF1 18,438 16,714 15,906 660 797.25 (759.73-848.88) 794.10 (749.07-861.90) 4.975 (4.950-5.001) 0.018 (0.018-0.019)
F. limnocharis Farmland AF2 23,334 21,971 20,716 1011 1358.82 (1287.07-1449.22) 1385.21 (1289.75-1513.36) 5.297 (5.275-5.320) 0.013 (0.013-0.014)
F. limnocharis Farmland AF3 20,095 18,963 18,403 590 863.05 (797.64-949.06) 839.50 (766.51-942.68) 2.960 (2.928-2.993) 0.152 (0.148-0.155)
B. adenopleura Forest BN1 15,562 13,495 12,137 473 577.71 (544.93-625.44) 573.44 (535.28-635.01) 4.760 (4.734-4.786) 0.017 (0.017-0.018)
B. adenopleura Forest BN2 17,135 15,531 14,281 523 611.29 (583.42-652.02) 610.55 (576.78-665.50) 4.881 (4.857-4.905) 0.015 (0.015-0.016)
B. adenopleura Forest BN3 11,948 8806 7346 427 511.07 (483.76-551.52) 512.85 (479.00-568.75) 4.700 (4.663-4.736) 0.024 (0.022-0.025)
B. adenopleura Farmland BF1 17,583 16,639 15,983 864 1104.41 (1051.07-1172.96) 1146.40 (1069.16-1252.73) 4.465 (4.430-4.499) 0.050 (0.048-0.052)
B. adenopleura Farmland BF2 17,350 16,103 15,564 583 825.47 (765.75-904.72) 842.37 (763.24-956.24) 3.568 (3.534-3.603) 0.097 (0.094-0.100)
B. adenopleura Farmland BF3 18,756 16,578 16,366 328 695.60 (619.92-790.92) 602.04 (506.14-749.57) 1.356 (1.322-1.390) 0.583 (0.573-0.592)

OTUs, operational taxonomic units defined by 97% identity threshold of the 16S rRNA gene; ACE, abundance-based coverage estimator.