Table 1.
Host species | Habitat | Sample | Reads for cleaning |
OTUs | ACE (95% CI) | Cha01 (95% CI) | Shannon (95% CI) | Simpson (95% CI) | ||
---|---|---|---|---|---|---|---|---|---|---|
1st | 2nd | Final | ||||||||
F. limnocharis | Forest | AN1 | 17,442 | 13,700 | 12,380 | 540 | 640.45 (609.75-684.66) | 653.55 (611.58-720.15) | 4.878 (4.850-4.907) | 0.024 (0.022-0.025) |
F. limnocharis | Forest | AN2 | 17,343 | 15,656 | 14,737 | 291 | 361.32 (334.88-403.68) | 370.88 (334.72-436.92) | 3.552 (3.522-3.583) | 0.088 (0.085-0.091) |
F. limnocharis | Forest | AN3 | 37,167 | 34,860 | 33,441 | 458 | 524.32 (501.48-559.15) | 541.72 (507.34-600.06) | 3.420 (3.398-3.442) | 0.102 (0.100-0.104) |
F. limnocharis | Farmland | AF1 | 18,438 | 16,714 | 15,906 | 660 | 797.25 (759.73-848.88) | 794.10 (749.07-861.90) | 4.975 (4.950-5.001) | 0.018 (0.018-0.019) |
F. limnocharis | Farmland | AF2 | 23,334 | 21,971 | 20,716 | 1011 | 1358.82 (1287.07-1449.22) | 1385.21 (1289.75-1513.36) | 5.297 (5.275-5.320) | 0.013 (0.013-0.014) |
F. limnocharis | Farmland | AF3 | 20,095 | 18,963 | 18,403 | 590 | 863.05 (797.64-949.06) | 839.50 (766.51-942.68) | 2.960 (2.928-2.993) | 0.152 (0.148-0.155) |
B. adenopleura | Forest | BN1 | 15,562 | 13,495 | 12,137 | 473 | 577.71 (544.93-625.44) | 573.44 (535.28-635.01) | 4.760 (4.734-4.786) | 0.017 (0.017-0.018) |
B. adenopleura | Forest | BN2 | 17,135 | 15,531 | 14,281 | 523 | 611.29 (583.42-652.02) | 610.55 (576.78-665.50) | 4.881 (4.857-4.905) | 0.015 (0.015-0.016) |
B. adenopleura | Forest | BN3 | 11,948 | 8806 | 7346 | 427 | 511.07 (483.76-551.52) | 512.85 (479.00-568.75) | 4.700 (4.663-4.736) | 0.024 (0.022-0.025) |
B. adenopleura | Farmland | BF1 | 17,583 | 16,639 | 15,983 | 864 | 1104.41 (1051.07-1172.96) | 1146.40 (1069.16-1252.73) | 4.465 (4.430-4.499) | 0.050 (0.048-0.052) |
B. adenopleura | Farmland | BF2 | 17,350 | 16,103 | 15,564 | 583 | 825.47 (765.75-904.72) | 842.37 (763.24-956.24) | 3.568 (3.534-3.603) | 0.097 (0.094-0.100) |
B. adenopleura | Farmland | BF3 | 18,756 | 16,578 | 16,366 | 328 | 695.60 (619.92-790.92) | 602.04 (506.14-749.57) | 1.356 (1.322-1.390) | 0.583 (0.573-0.592) |
OTUs, operational taxonomic units defined by 97% identity threshold of the 16S rRNA gene; ACE, abundance-based coverage estimator.