Table 1.

Sequencing metrics for control DNA samples

Cell line	Input DNA (ng)	Number of replicates	Target coverage, mean (SD)	% on target bases, mean (SD)	Fold 80 base penalty, mean (SD)
NA12878	300	4	3097 (125)	85% (0%)	1.77 (0.01)
	100	4	3028 (149)	79% (0%)	1.96 (0.01)
	30	4	2342 (161)	78% (1%)	2.20 (0.04)
	10	4	2735 (289)	67% (3%)	3.57 (0.33)
HD753	100	3	6941 (739)	56% (1%)	1.85 (0.01)
	30	3	3920 (301)	56% (1%)	1.87 (0.08)
	10	3	4045 (727)	51% (2%)	2.22 (0.16)
HD200	300	4	4441 (1312)	73% (1%)	1.96 (0.05)
	100	4	4509 (1073)	66% (1%)	2.05 (0.10)
	30	4	2766 (507)	62% (1%)	2.29 (0.06)
	10	4	1721 (214)	61% (1%)	2.64 (0.11)

SD standard deviation