Table 1. The applied biclustering tools and their parameter space.
| Algorithm | References | Parameters |
|---|---|---|
| Bi-Force | – | Edge threshold: t0. |
| FABIA | (32) | Number of biclusters: p. |
| QUBIC | (34) | Range of possible ranks: r; |
| Percentage of regulating conditions for each gene: q; | ||
| Number of biclusters: p. | ||
| Cheng and Church | (7) | Variance threshold: δ; |
| Multi-deletion parameter: α. | ||
| Plaid | (26) | Number of max. iterations for each layer: MI; |
| Max. number of layers: ML. | ||
| BiMax | (16) | Number of biclusters: n; |
| Min. row size: minr; | ||
| Min. column size: minc. | ||
| Spectral | (35) | Normalization method: norm; |
| Min. row size: minr; | ||
| Min. column size: minc. | ||
| xMOTIFs | (36) | Number of biclusters: n. |
| ISA | (33) | Number of seeds: ns. |