Table 1.

Summary of mapping results. Comparison of ResCap against MSS technology. The mapping ratios (on-target value) were extracted from the number of reads mapped (SAM files) divided by the total number of reads. The “gain values” are the results of dividing ResCap on-target value by the MSS on-target value

Sample	Metagenome shotgun sequence MSS					ResCap					Gain
	N° reads	AbR	BacMet	Rel	Total	N° reads	AbR	BacMet	Rel	Total
Bichat1	14,127,290	0.05%	0.002%	0.04%	0.10%	16,705,789	19%	0.48%	5.22%	24.68%	244.24
Bichat2	15,128,135	0.05%	0.028%	0.04%	0.12%	33,589,838	12%	5.56%	2.98%	20.27%	170.81
Bichat3	14,488,245	0.05%	0.005%	0.03%	0.09%	17,276,637	34%	2.31%	5.96%	41.83%	480.59
Bichat6	17,476,666	0.07%	0.001%	0.05%	0.12%	19,191,320	25%	0.85%	5.84%	32.13%	261.87
Bichat7	16,732,926	0.07%	0.002%	0.05%	0.13%	28,530,922	27%	0.33%	5.99%	33.60%	267.77
Bichat9	17,058,000	0.03%	0.013%	0.05%	0.09%	18,038,257	14%	10.59%	7.55%	31.80%	336.29
Bichat10	15,039,883	0.03%	0.066%	0.06%	0.15%	34,798,281	6%	28.81%	5.48%	40.63%	265.17
Bichat11	13,425,077	0.03%	0.091%	0.06%	0.18%	35,901,508	5%	26.73%	4.72%	35.98%	201.67
Bichat13	17,903,872	0.05%	0.023%	0.06%	0.14%	26,283,052	16%	13.27%	7.39%	36.85%	270.02
F266	19,557,955	0.06%	0.005%	0.02%	0.08%	14,024,345	21%	4.62%	2.57%	28.23%	337.50
PIG20	27,375,311	0.08%	0.028%	0.01%	0.12%	22,485,364	18%	16.20%	1.81%	36.38%	298.23
PIG26	13,831,057	0.07%	0.005%	0.02%	0.10%	15,756,070	19%	3.88%	2.73%	25.93%	271.20
PIG29	18,945,765	0.09%	0.018%	0.02%	0.12%	26,223,850	18%	10.26%	2.52%	30.65%	248.31
PIG31	12,778,294	0.07%	0.010%	0.02%	0.09%	18,055,019	13%	5.76%	2.08%	20.77%	219.12
PIG528	19,689,471	0.06%	0.003%	0.02%	0.08%	13,864,257	21%	2.70%	3.11%	26.83%	323.23
PIG94	15,985,219	0.07%	0.004%	0.02%	0.10	15,351,408	18%	2.57%	3.31%	24.05%	240.20
PIG96	9,290,402	0.06%	0.001%	0.01%	0.07%	12,225,935	21%	1.13%	1.67%	23.84%	320.90