Skip to main content
. 2018 Jan 16;13(1):e0191042. doi: 10.1371/journal.pone.0191042

Fig 1. Maximum-likelihood phylogeny of QLD S. Enteritidis isolates, S. Typhimurium LT2 and S. Gallinarum 287/91 rooted to S. Berta.

Fig 1

Isolates cluster into three clades as indicated. The scale bar shows substitutions per site. Sequence type and Phage type are indicated by colour as shown in the legend. The presence and absence of regions of difference (RODs) and prophages are also indicated in the following order: φSE10, φSE12, φSE12A, φSE14, φSE20, RE-2010, ROD4, ROD9, ROD13, ROD17, ROD21, ROD25, ROD28, ROD34, ROD37, ROD42, with a white box indicating absence and a black box indicating presence. Blue stars, red triangles and blue boxes indicate partial presence of the prophage.