. Author manuscript; available in PMC: 2018 Jan 16.

Published in final edited form as: J Proteome Res. 2016 May 6;15(6):1830–1841. doi: 10.1021/acs.jproteome.6b00004

Table 5. Unique Cross-Links Identified at 1% FDR (at the Unique Cross-Linked Peptide Level) That Involve Peptides from Ribosome Associated Proteins.

peptides	proteins	matches
associated protein–associated protein
`KLDEVR(1)-KWLEER(1)`	C9QZG0, uncharacterized protein; C9QZG0, uncharacterized protein	14
`KDAEVR(1)-KIEAALADK(1)`	C9QRL6, ribosome-recycling factor; C9QRL6, ribosome-recycling factor	2
`ALDDVKK(6)-YVELKAR(5)`	C9QR42, regulatory protein; C9QR42, regulatory protein	2
`FLADNYGKTVSR(8)-TFVIDKAGY(6)`	C9R1A9, ribonuclease; C9R1A9, ribonuclease	1
`AEKALDDVK(3)-YVELKAR(5)`	C9QR42, regulatory protein; C9QR42, regulatory protein	1
`NKELMDNMR(2)-TNELKADEER(5)`	C9QQ82, trigger factor; C9QQ82, trigger factor	2
`IAGLEVKR(7)-QATKDAGR(4)`	C9QSQ5, chaperone protein DnaK; C9QSQ5, chaperone protein DnaK	1
associated protein–ribosomal protein
`GGKR(3)-AVAERALEKGIK(9)`	C9QTY9, translation initiation factor; ribosomal L18	1
`EAKLK(3)-IKLVSSAGTGHFYTTTK(2)`	C9R115, signal recognition particle protein; ribosomal L33	1
`MKGGKR(1)-ADGKVK(4)`	C9QTY9, translation initiation factor; ribosomal L27	1