Table 6. Significant markers in the GWAS using the interaction method.
| QTL | Chr | Pos1 | Pos2 | Size | MA | TIL | RL | ROOT | SHOOT | LA | SLA |
|---|---|---|---|---|---|---|---|---|---|---|---|
| q01_01 | 1 | 717 021 | 37 | 3.97E-05 | |||||||
| q01_02 | 1 | 2 228 168 | 97 | 3.97E-05 | |||||||
| q01_03 | 1 | 7 015 229 | 45 | 2.64E-05 | 1.35E-05 | ||||||
| q01_04 | 1 | 12 176 520 | 71 | 2.25E-07 | |||||||
| q01_05 | 1 | 24 026 841 | 5 | 7.95E-06 | |||||||
| q01_06 | 1 | 24 984 212 | 24 984 220 | 1 | 83 | 2.55E-06 | |||||
| q01_07 | 1 | 26 424 572 | 26 588 934 | 164 | 62 | 8.94E-07 | |||||
| q01_08 | 1 | 29 154 215 | 29 203 007 | 49 | 46 | 7.73E-07 | |||||
| q01_09 | 1 | 42 986 168 | 57 | 1.45E-07 | |||||||
| q02_04 | 2 | 10 595 315 | 95 | 2.69E-05 | |||||||
| q02_05 | 2 | 21 847 001 | 21 858 276 | 11 | 105 | 1.52E-07 | |||||
| q02_06 | 2 | 22 114 658 | 23 678 820 | 1 564 | 31 | 1.30E-07 | |||||
| q02_07 | 2 | 24 553 256 | 110 | 3.85E-06 | |||||||
| q02_08 | 2 | 25 445 687 | 25 445 690 | 1 | 59 | 2.55E-05 | |||||
| q02_09 | 2 | 25 885 060 | 25 990 477 | 105 | 99 | 8.57E-07 | |||||
| q02_10 | 2 | 28 113 111 | 39 | 2.00E-07 | |||||||
| q02_11 | 2 | 28 486 697 | 29 118 703 | 632 | 28 | 8.64E-06 | 1.75E-05 | ||||
| q03_05 | 3 | 270 110 | 64 | 2.88E-07 | |||||||
| q03_06 | 3 | 28 101 825 | 28 141 030 | 39 | 26 | 6.21E-07 | |||||
| q04_03 | 4 | 20 318 757 | 7 | 2.17E-06 | 5.16E-06 | 1.44E-05 | |||||
| q04_04 | 4 | 21 610 862 | 115 | 4.89E-06 | |||||||
| q04_05 | 4 | 29 922 354 | 29 922 382 | 69 | 8.58E-07 | ||||||
| q04_06 | 4 | 30 482 527 | 30 482 534 | 1 | 43 | 4.82E-05 | |||||
| q04_07 | 4 | 31 707 318 | 30 | 6.30E-06 | |||||||
| q04_08 | 4 | 32 277 704 | 10 | 6.24E-06 | |||||||
| q05_01 | 5 | 3 615 491 | 3 615 493 | 1 | 11 | 1.50E-05 | 1.73E-05 | 8.51E-07 | |||
| q05_02 | 5 | 4 771 178 | 9 | 3.54E-08 | |||||||
| q05_03 | 5 | 5 025 167 | 5 025 170 | 1 | 7 | 1.92E-05 | 9.03E-06 | 1.11E-07 | |||
| q05_04 | 5 | 21 791 187 | 13 | 6.87E-06 | |||||||
| q05_05 | 5 | 23 572 890 | 23 593 730 | 21 | 9 | 6.38E-06 | 8.57E-06 | 3.10E-07 | |||
| q06_02 | 6 | 4 405 810 | 6 063 085 | 1 657 | 40 | 9.64E-08 | |||||
| q06_05 | 6 | 18 153 220 | 18 191 644 | 38 | 93 | 3.19E-08 | |||||
| q06_06 | 6 | 21 539 402 | 21 552 746 | 13 | 111 | 2.01E-06 | |||||
| q06_07 | 6 | 21 802 147 | 22 225 475 | 423 | 53 | 2.32E-06 | 1.46E-05 | 2.71E-09 | |||
| q06_03 | 6 | 21 981 979 | 21 982 001 | 1 | 107 | 4.38E-07 | |||||
| q07_03 | 7 | 17 817 832 | 19 631 592 | 1 814 | 6 | 2.71E-06 | 2.05E-06 | ||||
| q07_04 | 7 | 22 931 083 | 23 068 438 | 137 | 13 | 2.43E-05 | |||||
| q08_04 | 8 | 750 753 | 33 | 4.54E-05 | |||||||
| q08_05 | 8 | 21 353 911 | 21 466 673 | 113 | 110 | 5.62E-08 | |||||
| q08_06 | 8 | 21 851 814 | 69 | 1.49E-08 | |||||||
| q09_05 | 9 | 18 387 915 | 33 | 8.66E-07 | |||||||
| q09_06 | 9 | 21 329 392 | 22 | 3.87E-05 | |||||||
| q10_02 | 10 | 15 211 421 | 15 | 3.34E-05 | 1.71E-06 | ||||||
| q10_03 | 10 | 20 065 884 | 20 144 369 | 78 | 51 | 3.49E-06 | |||||
| q10_04 | 10 | 21 618 949 | 21 893 599 | 275 | 13 | 3.75E-05 | |||||
| q11_04 | 11 | 4 376 870 | 67 | 2.18E-06 | |||||||
| q11_05 | 11 | 22 302 306 | 22 | 7.42E-07 | |||||||
| q12_01 | 12 | 17 940 089 | 106 | 2.88E-05 | |||||||
| q12_02 | 12 | 20 014 218 | 20 789 916 | 776 | 104 | 3.10E-07 | |||||
| q12_03 | 12 | 21 834 586 | 34 | 3.11E-07 | |||||||
| Nb of QTLs | 5 | 8 | 13 | 14 | 15 | 9 | |||||
Chr: chromosome; Pos1-Pos2: limits (bp) of the interval with LD > 0.8; Size: size of the interval in kb; MA: number of accessions carrying the minor allele; TIL: number of tillers; LL: maximum leaf length; RL: maximum root length, ROOT: root biomass; SHOOT: shoot biomass; R/S: root-to-shoot ratio; LA: leaf area; and SLA: specific leaf area.