Table 2. Model parameters.
The mean value and standard deviation within the parameter ensemble (where applicable) are indicated for each parameter.
| Parameter | Description | Main model | Parameter values from Corson and Siggia (2012) | Model with EGF/Notch coupling (Figure 7) | Alternate models of Figure 2—figure supplements 3 and 4 |
|---|---|---|---|---|---|
| Model parameters | |||||
| Bias towards the default 3° fate | 0.47 ± 0.03 | 0.39 ± 0.03 | 0.51 ± 0.03 | 0.5 | |
| 210 (fixed) | 210 (fixed) | 210 (fixed) | 210 | ||
| Response to EGF* | 3.87 ± 0.52 | 4.60 ± 0.98 | 3.86 ± 0.52 | 6 | |
| −21 ± 8 | −30 (fixed) | −9 ± 6 | −30 | ||
| Response to Notch* | 6.25 ± 1.28 | 5.97 ± 1.07 | 7.72 ± 1.31 | 6 | |
| 73 ± 3 | 90 (fixed) | 73 ± 5 | 90 | ||
| Characteristic time scale of dynamics | 2.02 ± 0.16 | 2.18 ± 0.30 | 2.23 ± 0.25 | 2 | |
| Noise level | 0.12 ± 0.02 | 0.12 ± 0.03 | 0.14 ± 0.02 | 0.14 | |
| Shape of EGF gradient | 0.23 ± 0.02 | 0.16 ± 0.03 | 0.22 ± 0.02 | 0.2 | |
| Relative strength of autocrine signaling | 1.08 ± 0.11 | 1.14 ± 0.17 | 1.24 ± 0.22 | 1/2 (Figure 2—figure supplement 3) or 0 (Figure 2—figure supplement 4) | |
| Threshold for lateral signaling | −1.20 ± 0.09 | −1.23 ± 0.10 | −1.29 ± 0.11 | 0.25 | |
| † | −46 ± 3 | −48 ± 3 | −46 ± 3 | −45 | |
| Signal levels for experiments in the training set | |||||
| Ectopic EGF level in the lin-15 mutant | 0.42 ± 0.11 | 0.55 ± 0.25 | 0.51 ± 0.20 | N/A | |
| EGF level in the JU1100 overexpression line | 4.18 ± 0.49 | 7.39 ± 1.36 | 4.84 ± 0.67 | N/A | |
| EGF level in the lin-3(e1417) hypomorph | 0.28 ± 0.03 | N/A | 0.28 ± 0.03 | N/A | |
| Ectopic Notch activity in the JU2064 line | 0.05 ± 0.03 | N/A | 0.04 ± 0.02 | N/A | |
*While the vectors and are parameterized by their Cartesian coordinates, with Gaussian priors, the mean ±SD of their norm and orientation are shown for convenience. Angles (symbolized by ) are relative to the horizontal axis of the fate plane and in degrees.
†As in (Corson and Siggia, 2012), the sharpness of the threshold for lateral signaling was set to a default value, , so that its orientation alone is fit; a similar value for the norm of is recovered when it is not imposed in the fit.