Table 1. Table of genes of interest.
The table lists the source transcriptome contigs (annotated by BLASTx against the Uniprot database), as well as the biological categorization, the Uniprot Accession, Uniprot Entry Name, Uniprot Annotation, a brief description of the proteins’ functions, and the BLASTx e-values.
| Transcriptome contig name | Biological category | Uniprot accession | Uniprot entry name | Uniprot annotation | Function | Gene abbr | BLASTX evalue |
|---|---|---|---|---|---|---|---|
| comp7220_c0_seq2 | Immune response, Gene regulation | Q6DC04 | CARM1_DANRE | Histone-arginine methyltransferase | Transfers methyl groups to Histone 3 for chromatin remodeling | CARM1 | 0 |
| comp23747_c0_seq1 | Immune response | Q9DD78 | TLR21_CHICK | Toll-like receptor 2 type 1 | Assists with recognition of foreign pathogens and endogenous materials for consumptions by phagocytes in early stages of inflammation | TLR | 8.00E−29 |
| comp25000_c0_seq1 | Immune response, Gene regulation | P08991 | H2AV_STRPU | Histone H2A.V | One of 5 main Histone Proteins involved in the structure of chromatin and the open reading frame of DNA | H2AV | 5.00E−64 |
| comp24065_c0_seq1 | Immune response | O75594 | PGRP1_HUMAN | Peptidoglycan recognition protein 1 | Assists with recognition of bacteria in an immune response | PGRP | 2.00E−42 |
| comp44273_c0_seq2 | Immune response | Q8MWP4 | Q8MWP4_OSTED | Heat Shock Protein 70 kDa | Molecular chaperone and protein preservation in heat response | HSP70 | 0 |
| comp7183_c0_seq1 | Growth | P12643 | BMP2_HUMAN | Bone morphogenetic protein 2 | Directs calcification in shell creation | BMP2 | 2.00E−93 |
| comp10127_c0_seq1 | Gene regulation | P62994 | GRB2_RAT | Growth factor receptor-bound protein 2 | Assists in signal transduction/cell communication | GRB2 | 1.00E−83 |
| comp6939_c0_seq1 | Immune response | P32240 | PE2R4_MOUSE | Prostaglandin E2 receptor EP4 subtype | Receptor for Prostaglandin E2 which suppresses inflammation due to injury | PGEEP4 | 1.00E−50 |
| comp25313_c0_seq1 | Immune response | Q60803 | TRAF3_MOUSE | Tumor Necrosis Factor receptor-associated factor 3 | Related to immune response specifically cell death initiation | TRAF3 | 3.00E−145 |
| comp30443_c0_seq2 | Growth | Q8TA69 | Q8TA69_CRAGI | Actin | Cytoskeletal formation. Used as a normalizing gene for qPCR analysis. | Actin | 0 |