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. 2018 Jan 17;8:940. doi: 10.1038/s41598-017-18378-8

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© The Author(s) 2018

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Structure of the plastid genomes of P. stagnora and P. cutis. (a,b) Gene maps of the plastid genomes of P. stagnora and P. cutis, respectively. Genes are shown in different coloured boxes according to their putative functions. Genes on the outside of the maps are transcribed in the clockwise direction, and inner genes are transcribed in the counterclockwise direction. (c) Comparison of the gene order of the plastid genomes of C. variabilis, A. protothecoides, P. wickerhamii, P. cutis, P. stagnora, and Helicosporidium sp. Homologous genes are connected by straight lines as shown in the figure. Most of the photosynthesis-related genes (green) are absent in the non-photosynthetic lineages.