Table 3.
Predicted experimental values and comparative binding free energies for wild-type and alanine mutants.
Systems | Isothermal titration microcalorimetry results | MM-GBSA | ||||
---|---|---|---|---|---|---|
Ka(x104 M−1) | −∆G (kcal mol−1) | −∆H (kcal mol−1) | −T∆S (kcal mol−1) | Pre-MD (kcal mol−1) | Post-MD (kcal mol−1) | |
Wild-type | 22.4 ± 1.6 | 7.3 | 14.2 ± 0.2 | 6.9 | −29.71 | −26.61 |
H44A | — | — | — | — | −29.97 | −21.70 |
H47A | 2.46 ± 0.11 | 6.0 | 7.2 ± 0.2 | 1.2 | −28.56 | −20.76 |
N69A | 9.1 ± 0.4 | 6.8 | 13.0 ± 0.23 | 6.1 | −30.39 | −22.33 |
Q72A | 13.2 ± 0.29 | 7.0 | 13.1 ± 0.46 | 6.2 | −32.00 | −27.28 |
K160A | 0.45 ± 0.02 | 5.0 | 8.4 ± 0.3 | 3.4 | −25.24 | −17.93 |
Q164A | 13.2 ± 0.29 | 7.0 | 17.3 ± 0.1 | 10.3 | −30.49 | −26.47 |
“—”: not predicted.