Table 2.
Statistics of alignment of four Sultanina de novo assemblies with V. vinifera (PN40024 12X.v2) reference genome
| AP | PLAT_d | MERGE | PLAT*_GC | |
|---|---|---|---|---|
| Total Scaffold number > 1 kbp | 17,920 | 24,112 | 22,566 | 23,981 |
| Top-hits-length (95% identity and minimum 1kbp alignment lengtha | 99,297,844 | 131,213,373 | 126,718,587 | 152,634,079 |
| Number of scaffolds aligned (95% identity and minimum 1 kbp alignment, % total scaffolds) | 10,892 (61%) | 16,462 (68%) | 15,193 (67%) | 16,572 (69%) |
| Top-hits-length (100% identity and minimum 1 kbp alignment length | 470,236 | 1,824,500 | 1,604,407 | 1,509,723 |
| Number of scaffolds aligned, (100% identity and minimum 1 kbp alignment) | 187 | 615 | 560 | 558 |
| SyMAP synteny blocks (anchors having alignment lengths >10 kb)b | 12,112 | 13,448 | 13,421 | 13,412 |
aOne-to-one relationship between scaffolds for each assembly and the reference genome were constructed according to the longest alignment for each scaffold, and the total of the alignment lengths (top-hits-length) were calculated
bCalculated with SyMAP [42] used to map with the V. vinifera reference genome