. 2017 Dec 6;89:1–62. doi: 10.1016/j.simyco.2017.11.004

Table 1.

List of fungi, isolate information and new sequences determined for this study and those retrieved from GenBank. The asterisk (*) denotes ex-type strains of members of the Xenospadicoidales. GenBank accession numbers in bold were generated for this study.

Classification	Taxon	Source	GenBank accession numbers
Classification	Taxon	Source	nucLSU	nucSSU	rpb2	ITS	act1	tub2	References
Annulatascales	Annulatascus velatisporus	A 70-18	AY316354	–	–	–	–	–	Raja et al. (2003)
	Annulusmagnus triseptatus	CBS 131483	GQ996540	JQ429242	JQ429258	–	–	–	Réblová et al., 2010, Réblová et al., 2012
	Ascitendus austriacus	CBS 131685	GQ996539	GQ996542	JQ429257	–	–	–	Réblová et al., 2010, Réblová et al., 2012
Atractosporales	Atractospora decumbens	CBS 139032	KT991658	KT991640	KT991647	–	–	–	Réblová et al. (2016)
	A. ellipsoidea	A 411-3	AY316356	–	–	–	–	–	Raja et al. (2003)
	A. reticulata	CBS 127884	KT991660	–	KT991649	–	–	–	Réblová et al. (2016)
	A. verruculosa	CBS 132040	KT991659	KT991641	KT991648	–	–	–	Réblová et al. (2016)
	Rubellisphaeria abscondita	CBS 132078	KT991666	KT991646	KT991657	–	–	–	Réblová et al. (2016)
Barbatosphaeriaceae	Barbatosphaeria barbirostris	CBS 121149	EF577059	KM492851	KM492903	–	–	–	Réblová et al. (2015b)
Barbatosphaeriaceae	B. dryina	CBS 127691	KM492864	KM492852	KM492904	–	–	–	Réblová et al. (2015b)
Boliniales	Camarops microspora	CBS 649.92	AY083821	DQ471036	DQ470937	–	–	–	Smith et al., 2003, Spatafora et al., 2007
	Apiorhynchostoma curreyi	UAMH 11088	JX460989	KY931894	KY931926	–	–	–	Untereiner et al. (2013), this study
	Endoxyla operculata	UAMH 11085	JX460992	KY931895	KY931927	–	–	–	Untereiner et al. (2013), this study
Calosphaeriales	Calosphaeria pulchella	CBS 115999	AY761075	AY761071	GU180661	–	–	–	Réblová et al., 2004, Réblová et al., 2011
	Jattaea algeriensis	CBS 120871	EU367457	EU367462	HQ878603	–	–	–	Damm et al., 2008, Réblová, 2011
	Togniniella acerosa	CBS 113648	AY761076	AY761073	GU180660	–	–	–	Réblová et al., 2004, Réblová, 2011
Chaetosphaeriales	Chaetosphaeria ciliata	ICMP 18253	GU180637	GU180614	GU180659	–	–	–	Réblová et al. (2011)
	C. curvispora	ICMP 18255	GU180636	AY502933	GU180655	–	–	–	Réblová et al. (2011)
	Melanochaeta hemipsila	S.M.H. 2125	AY346292	–	AY780184	–	–	–	Huhndorf et al., 2004, Miller and Huhndorf, 2005
Coniochaetales	Barrina polyspora	AWR 9560A	AY346261	–	–	–	–	–	Huhndorf et al. (2004)
	Coniochaeta discoidea	SANK 12878	AY346297	AJ875179	AY780191	–	–	–	Huhndorf et al., 2004, García et al., 2006
	C. ostrea	CBS 507.70	DQ470959	DQ471007	DQ470909	–	–	–	Spatafora et al. (2007)
Cordanales	Cordana terrestris	ICMP 15117	EF063573	–	–	–	–	–	Réblová & Seifert (2007)
	C. pauciseptata	M.R. 1150	AF178563	–	–	–	–	–	Réblová & Winka (2000)
	C. pauciseptata	CBS 113708	EF204507	–	EF204490	–	–	–	Shenoy et al. (2010)
	C. pauciseptata	IMI 102120	HE672158	–	–	–	–	–	Hernández-Restrepo et al. (2014)
	C. ellipsoidea	IMI 229746	HE672156	–	–	–	–	–	Hernández-Restrepo et al. (2014)
	C. inaequalis	CBS 508.83	HE672157	–	–	–	–	–	Hernández-Restrepo et al. (2014)
Diaporthales	Diaporthe phaseolorum	FAU 458, NRRL 13736	U47830	L36985	AY641036	–	–	–	Spatafora and Blackwell, 1993, Reeb et al., 2004
	Gnomonia gnomon	CBS 199.53	AF408361	DQ471019	DQ470922	–	–	–	Castlebury et al., 2002, Spatafora et al., 2007
	Valsa ambiens	AR 3516	AF362564	DQ862056	DQ862025	–	–	–	Zhang et al. (2007)
Distoseptisporaceae	Distoseptispora fluminicola	MFLUCC 15-0417	KU376270	–	–	–	–	–	Su et al. (2016)
	D. aquatica	MFLUCC 15-0374	KU376268	–	–	–	–	–	Su et al. (2016)
	D. adscendens	HKUCC 10820	DQ408561	–	DQ435092	–	–	–	Shenoy et al. (2006)
	D. leonensis	HKUCC 10822	DQ408566	–	DQ435089	–	–	–	Shenoy et al. (2006)
Jobellisiales	Jobellisia fraterna	S.M.H. 2863	AY346285	–	–	–	–	–	Huhndorf et al. (2004)
Jobellisiales	J. luteola	S.M.H. 2753	AY346286	–	–	–	–	–	Huhndorf et al. (2004)
Magnaporthales	Gaeumannomyces graminis	AR 3401, M 57	AF362557	JF414874	–	–	–	–	Farr et al., 2001, Zhang et al., 2011
	Macgarvieomyces borealis	CBS 461.65	DQ341511	DQ341489	KM485070	–	–	–	Thongkantha et al., 2009, Klaubauf et al., 2014
	Magnaporthe grisea	Ina168, 70-15	AB026819	DQ493955	–	–	–	–	Sone et al., 2000, Rehmeyer et al., 2006
Myrmecridiales	Myrmecridium flexuosum	CBS 398.76	EU041825	–	–	EU041768	–	–	Arzanlou et al. (2007)
	M. montsegurinum	PRM 934684	KT991664	KT991645	KT991654	KT991674	–	–	Réblová et al. (2016)
	M. schulzeri	CBS 100.54	EU041826	–	–	EU041769	–	–	Arzanlou et al. (2007)
Ophiostomatales	Ceratocystiopsis minuta	UM 1533, WIN(M)1537	EU913657	HQ634854	–	–	–	–	Plattner et al., 2009, Hafez et al., 2012
	Fragosphaeria purpurea	CBS 133.34	AF096191	AF096176	–	–	–	–	Suh & Blackwell (1999)
	Ophiostoma piliferum	CBS 158.74	DQ470955	DQ471003	DQ470905	–	–	–	Spatafora et al. (2007)
	Raffaelea ambrosiae	CBS 185.64	EU984297	AY497518	–	–	–	–	Gebhardt et al., 2004, Massoumi Alamouti et al., 2009
Papulosaceae	Brunneosporella aquatica	HKUCC 3708	AF132326	–	–	–	–	–	Ranghoo et al. (1999)
	Fluminicola coronata	HKUCC 3717	AF132332	–	–	–	–	–	Ranghoo et al. (1999)
	Papulosa amerospora	J.K. 5547F	DQ470950	DQ470998	DQ470901	–	–	–	Spatafora et al. (2007)
Phomatosporales	Lanspora coronata	J.K. 4839A	U46889	DQ470996	DQ470899	–	–	–	Spatafora et al., 1998, Spatafora et al., 2007
Phomatosporales	Phomatospora bellaminuta	J.K. 5543N	FJ176857	FJ176803	FJ238345	–	–	–	Schoch et al. (2009)
Sordariales	Gelasinospora tetrasperma	CBS 178.33	DQ470980	DQ471032	DQ470932	–	–	–	Spatafora et al. (2007)
	Lasiosphaeria ovina	S.M.H. 1538, CBS 958.72	AF064643	AY083799	AY600292	–	–	–	Fernández et al., 1999, Smith et al., 2003, Miller and Huhndorf, 2004a
	Sordaria fimicola	S.M.H. 4106, MUCL 937, CBS 723.96	AY780079	X69851	DQ368647	–	–	–	Miller and Huhndorf, 2005, Tang et al., 2007
Sporidesmiaceae	Sporidesmium parvum	HKUCC 10836	DQ408558	–	–	–	–	–	Shenoy et al. (2006)
	S. minigelatinosa	NN 47497	DQ408567	–	DQ435090	–	–	–	Shenoy et al. (2006)
	S. bambusicola	HKUCC 3578	DQ408562	–	–	–	–	–	Shenoy et al. (2006)
	S. fluminicola	MFLUCC 15-0346	KU376271	–	–	–	–	–	Su et al. (2016)
	S. aquaticum	MFLUCC 15-0420	KU376273	–	–	–	–	–	Su et al. (2016)
	S. submersum	MFLUCC 15-0421	KU376272	–	–	–	–	–	Su et al. (2016)
Togniniales	Phaeoacremonium minimum	CBS 213.31, CBS 111015	AY761082	AY761068	HQ878610	–	–	–	Réblová et al., 2004, Réblová, 2011
Togniniales	P. fraxinopennsylvanicum	CBS 128920	HQ878595	HQ878600	HQ878609	–	–	–	Réblová (2011)
Woswasiaceae	Woswasia atropurpurea	CBS 133167	JX233658	JX233658	JX233659	–	–	–	Jaklitsch et al. (2013)
Woswasiaceae	Xylochrysis lucida	CBS 135996	KF539911	KF539912	KF539913	–	–	–	Réblová et al. (2014)
Xenospadicoidales	Calyptosphaeria collapsa	PRA-12743*	KY931834	KY931892	KY931861	KY931808	KY931771	KY931924	This study
	C. subdenudata	S.M.H. 3877*	EU527994	–	–	KY931774	KY931739	–	Huhndorf et al. (2008), this study
	C. subdenudata	S.M.H. 2534	EU527993	–	–	KY931775	KY931740	–	Huhndorf et al. (2008), this study
	C. tenebrosa	PRA-12742	–	–	–	KY931776	KY931741	–	This study
	C. tenebrosa	PRA-12741	KY931809	KY931864	KY931836	KY931777	KY931742	KY931898	This study
	C. tenebrosa	PRA-12740*	KY931810	KY931865	KY931837	KY931778	KY931743	KY931899	This study
	C. tropica	S.M.H. 1797*	EU527992	KY931866	–	KY931779	KY931744	–	Huhndorf et al. (2008), this study
	C. tropica	S.M.H. 3225	EU527999	–	–	–	–	–	Huhndorf et al. (2008), this study
	Lentomitella cirrhosa	ICMP 15131*	AY761085	AY761089	KM492911	KY931780	KY931745	KY931900	Réblová, 2006, Réblová et al., 2015b, this study
	L. crinigera	CBS 138678	KY931811	KY931867	–	KY931781	KY931746	KY931901	This study
	L. conoidea	CBS 131481	KT991663	KT991644	KT991653	KY931782	KY931747	–	Réblová et al. (2016), this study
	L. conoidea	CBS 131660	KY931812	KY931868	KY931840	KY931783	KY931748	KY931902	This study
	L. conoidea	CBS 141370	KY931813	KY931869	KY931841	KY931784	KY931749	KY931903	This study
	L. conoidea	M.R. 3135	KY931814	KY931870	KY931842	KY931785	KY931750	KY931904	This study
	L. magna	ICMP 18371*	KY931815	KY931871	KY931843	KY931786	KY931751	–	This study
	L. obscura	CBS 137799	KY931816	KY931872	KY931844	KY931787	KY931752	KY931905	This study
	L. obscura	CBS 138735	KY931817	KY931873	–	KY931788	KY931753	KY931906	This study
	L. obscura	CBS 138736*	KY931818	KY931874	KY931845	KY931789	KY931754	KY931907	This study
	L. striatella	ICMP 18369*	KY931819	KY931875	KY931846	KY931790	KY931755	KY931908	This study
	L. sulcata	ICMP 15124*	AY761086	KY931876	KY931847	KY931791	KY931756	KY931909	This study
	L. tenuirostris	CBS 138734*	KY931821	KY931877	KY931849	KY931792	KY931758	KY931910	This study
	L. tenuirostris	CBS 141371	KY931822	KY931878	KY931850	KY931793	KY931759	KY931911	This study
	L. vestita	PRA-12739	KY931820	KY931879	KY931848	KY931794	KY931757	–	This study
	Lentomitella sp.	M.R. 2953	KY931823	KY931880	–	KY931795	–	KY931912	This study
	Spadicoides atra	CBS 489.77	EF204506	EF204521	EF204489	–	–	–	Shenoy et al. (2010)
	S. bina	CBS 137794	KY931824	KY931881	KY931851	KY931796	KY931760	KY931913	This study
	S. fuscolutea	CBS 141262	KY931825	KY931882	KY931852	KY931797	KY931761	KY931914	This study
	S. fuscolutea	CBS 141263	KY931826	KY931883	KY931853	KY931798	KY931762	KY931915	This study
	S. hyalostoma	CBS 131268	KY931827	KY931884	KY931854	KY931799	KY931763	KY931916	This study
	S. hyalostoma	CBS 137793	KY931828	KY931885	KY931855	KY931800	KY931764	KY931917	This study
	S. hyalostoma	CBS 138688	KY931829	KY931886	KY931856	KY931801	KY931765	KY931918	This study
	S. hyalostoma	CBS 139771	KY931830	KY931887	KY931857	KY931802	KY931766	KY931919	This study
	S. iberica	CBS 127864*	KY853527	–	–	–	–	–	Hernández-Restrepo et al. (2017)
	Torrentispora aquatica	HKU(M) 17484*	AY780365	–	–	–	–	–	Vijaykrishna et al. (2005)
	T. biatriispora	A 464-3	AY316352	–	KY931858	KY931803	KY931767	KY931920	Raja et al. (2003), this study
	T. calembola	PRA-12744*	KY931831	KY931888	–	KY931804	KY931768	KY931921	This study.
	T. dubia	PRA-12746	KY931832	KY931889	–	KY931805	KY931769	KY931922	This study
	T. fibrosa	ICMP 15147	EF577060	KY931890	KY931859	KY931806	KY931770	KY931923	This study
	T. novae-zelandiae	ICMP 18368*	KY931833	KY931891	KY931860	KY931807	–	–	This study
Genera incertae sedis	Brachysporium nigrum	M.R. 1346	KT991662	KT991643	KT991652	–	–	–	Réblová et al. (2016)
	B. polyseptatum	DAOM 231136	AY281102	–	–	–	–	–	Réblová & Seifert (2004)
	Bullimyces communis	AF 281-3	JF775585	JF758617	–	–	–	–	Ferrer et al. (2012)
	Ceratostomella cuspidata	ICMP 17629	FJ617558	KT991642	KT991651	KT991671	KY931772	–	Réblová et al. (2016), this study
	C. pyrenaica	CBS 129343	KY931835	KY931893	KY931863	KT991672	KY931773	–	Réblová et al. (2016), this study
	Ceratolenta caudata	CBS 125234	JX066704	JX066708	JX066699	–	–	–	Réblová (2013)
	Natantiella ligneola	CBS 123470	FJ617556	HQ878598	HQ878605	–	–	–	Réblová et al. (2016)
	Platytrachelon abietis	CBS 125235	JX066703	JX066707	JX066698	–	–	–	Réblová (2013)
	Rhamphoria delicatula	M.R. 1396	AF261068	AF242267	KT991655	–	–	–	Winka, 2000, Réblová et al., 2016
	Rhodoveronaea varioseptata	CBS 123473	FJ617560	JX066710	JX066700	–	–	–	Réblová (2009, 2013)
	Spadicoides verrucosa	CBS 128.86	EF204508	EF204522	–	–	–	–	Shenoy et al. (2010)
	Sporidesmium tropicale	HKUCC 10838	DQ408560	–	–	–	–	–	Shenoy et al. (2006)
	Thyridium vestitum	AR 3872	AY544671	AY544715	DQ470890	–	–	–	Schoch et al., 2009, Spatafora et al., 2007
	Xylomelasma sordida	CBS 116000	AY761087	AY761090	KY931929	–	–	–	Réblová (2006), this study
Helotiales (outgroup)	Leotia lubrica	AFTOL 1	AY544644	L37536	DQ470876	–	–	–	Gargas and Taylor, 1995, Spatafora et al., 2007, Schoch et al., 2009
Helotiales (outgroup)	Microglossum rufum	AFTOL 1292	DQ470981	DQ257358	DQ470933	–	–	–	Spatafora et al. (2007)