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. 2018 Jan 18;6:15. doi: 10.1186/s40168-018-0399-2

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© The Author(s). 2018

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 2 — Species pan-genomes containing regions highly similar to E. coli. The number of contigs that either align to at least two marker genes or align to at least one marker gene while the aligned region covers more than 50% of the marker gene sequence is shown for each species pan-genome