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. 2018 Jan 18;6:15. doi: 10.1186/s40168-018-0399-2

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© The Author(s). 2018

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 3 — Read classification of low-complexity in silico synthetic communities using Bowtie 2 and PathoScope 2.0. a The proportion of mappable reads generated from synthetic communities composed of 5, 10, or 20 S. epidermidis or B. fragilis strains. b The proportion of mappable versus wrongly assigned reads generated from synthetic communities composed of five different Staphylococcus or Bacteroides species, or species representing five different bacterial phyla