Table 1:
Summary statistics of generated whole-genome shotgun sequencing data using Illumina Nextseq 500
Library name | Library type | Insert size | Platform | Read length | No. of reads | Total base, bp | Reads retained after trimming |
---|---|---|---|---|---|---|---|
350 bp | Paired-end | 350 bp | Nextseq500 | 151 | 293 176 268 | 44 269 616 468 | 291 070 362 |
700 bp | Paired-end | 700 bp | Nextseq500 | 151 | 246 945 900 | 37 288 830 900 | 244 698 580 |
3 Kbp | Mate-pair | 3 Kbp | Nextseq500 | 76 | 284 204 762 | 21 599 561 912 | 195 095 164 |
6 Kbp | Mate-pair | 6 Kbp | Nextseq500 | 76 | 246 238 370 | 18 714 116 120 | 152 496 372 |
9 Kbp | Mate-pair | 9 Kbp | Nextseq500 | 76 | 239 919 538 | 18 233 884 888 | 148 612 724 |
Total | 1 310 484 838 | 140 106 010 288 | 1 031 973 202 |