Table 1. Disease-causing mutations and phenotypes of individual A3964-21 with end-stage renal disease and homozygous missense mutation in VWA2.
Individual | Origin | Causative Gene | Genomic coordinates (hg19) | Alteration in coding sequence | Altera-tion of protein | Zygo-sity | Contin-uous AA sequence conservation | PP2 MutTast SIFT CADD | ExAC | Gnomad | Pheno-type |
---|---|---|---|---|---|---|---|---|---|---|---|
A3964-21 | India | VWA2 | chr10:116046036C>T | c.1336C>T | p.Arg446Cys | Homo | Mus musculus | P.D. (0.95); D.c. (0.997); Tol. (0.1); 29.0 | 0/54/119156 (MAF 0.046%) | 2/114/274368 (MAF 0.041%) | bilat. VUR (V), ESRD |
AA, amino acid; PP2, Poly Phen 2; MutTast, Mutation Taster; SIFT, Sorting intolerant from tolerant; CADD, Combined Annotation Dependent Depletion; Homo, homozygous; P.D., probably damaging; D.c., Disease causing; Tol, tolerated; VUR, vesicoureteral reflux; ESRD, end-stage renal disease.