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. 2018 Jan 19;13(1):e0191224. doi: 10.1371/journal.pone.0191224

Table 1. Disease-causing mutations and phenotypes of individual A3964-21 with end-stage renal disease and homozygous missense mutation in VWA2.

Individual Origin Causative Gene Genomic coordinates (hg19) Alteration in coding sequence Altera-tion of protein Zygo-sity Contin-uous AA sequence conservation PP2 MutTast SIFT CADD ExAC Gnomad Pheno-type
A3964-21 India VWA2 chr10:116046036C>T c.1336C>T p.Arg446Cys Homo Mus musculus P.D. (0.95); D.c. (0.997); Tol. (0.1); 29.0 0/54/119156 (MAF 0.046%) 2/114/274368 (MAF 0.041%) bilat. VUR (V), ESRD

AA, amino acid; PP2, Poly Phen 2; MutTast, Mutation Taster; SIFT, Sorting intolerant from tolerant; CADD, Combined Annotation Dependent Depletion; Homo, homozygous; P.D., probably damaging; D.c., Disease causing; Tol, tolerated; VUR, vesicoureteral reflux; ESRD, end-stage renal disease.