TABLE 1.
Evolutionary selective forces and recombination in all 11 proteins of the Malawian G1P[8] rotavirus strainsa
| Protein | dN/dS by SLAC | ω (β/α) by FUBAR |
|---|---|---|
| VP1 | 0.0502 | 2.22 |
| VP2 | 0.0538 | 2.67 |
| VP3 | 0.0965 | 2.47 |
| VP4 | 0.1052 | 3.15 |
| VP6 | 0.0310 | 4.66 |
| VP7 | 0.2033 | 6.01 |
| NSP1 | 0.2239 | 4.21 |
| NSP2 | 0.0920 | 5.62 |
| NSP3 | 0.0870 | 5.44 |
| NSP4 | 0.1097 | 7.10 |
| NSP5 | 0.1097 | 7.47 |
a
Shown are posterior distributions of synonymous (α) and nonsynonymous (β) substitution rates over sites as well as mean posterior probabilities for a ω (β/α) value of <1 at a site. The consensus selective force in all cases was purifying selection, and there was no recombination determined by GARD or SBP.