Table 2.

Genes showing common upregulation in response to NDV in both Fayoumi and Leghorn chickens.

Ensembl Gene ID	Gene Name	Log2FC (NDV vs. Control) (Spleen/Trachea)
		Leghorn 2 dpi	Fayoumi 2 dpi	Leghorn 6 dpi	Fayoumi 6 dpi
ENSGALG00000016400	RSAD2	2.35*/6.62*	1.26*/6.19*	1.19*/2.45*	0.50/1.86
ENSGALG00000045085	IFIT5	3.11*	1.21*	1.28*	0.57
ENSGALG00000016142	Mx	3.61*/4.31*	1.18*/4.00*	1.87*/1.98*	0.59/1.72
ENSGALG00000038140	DDX60	2.43*	1.08*	1.26	1.08
ENSGALG00000028982	CMPK2	2.75*/3.77*	1.32*/3.70*	1.06/1.10	0.5/1.11
ENSGALG00000009479	SAMD9L	2.48*/7.63*	1.21*/6.65*	1.17/3.95*	0.32/3.9*
ENSGALG00000013723	OASL	2.96*	1.07*	1.16	0.44
ENSGALG00000013057	USP18	1.78*/4.55*	0.98*/4.37*	0.66/1.54*	0.35/1.69*
ENSGALG00000004859	ZNFX1	1.48*/2.26*	0.76*/1.92*	0.61/0.62	0.29/0.60
ENSGALG00000031916	ZP1	1.14*	0.65*	0.20	0.05
ENSGALG00000001558	MOV10	1.44*/3.68*	0.62*/3.30*	0.28/1.46*	0.20/1.23
ENSGALG00000003144	TRIM25	1.19*/2.25*	0.60*/2.01*	0.24/0.81	0.19/0.67
ENSGALG00000014603	C1S	0.82*/2.03*	0.61*/1.47*	0.56/0.74	0.23/0.62
ENSGALG00000045511	PARP9	0.88*	0.58*	0.10	−0.04
ENSGALG00000010560	EIF2AK2	0.92*/2.59*	0.51*/2.46*	0.40/0.88	0.20/0.57

Note: Log₂FC means Log₂ fold change. *Indicates that differential expression is significant (false discovery rate <0.05). Genes with observed data in trachea in our previous study¹³ have their log₂FC shown as spleen/trachea.