Table 5.
Gene ontology annotation results for genes in modules with a strong correlation (p < 0.05) with treatment or genetic line.
| Module | Gene No. | Biological Process | Accession No. | P-value | Represented Genes |
|---|---|---|---|---|---|
| Lightcyan | 61 | Negative regulation of viral genome replication | GO:0045071 | 0.009 | EIF2AK2, OASL, RSAD2, STAT1 |
| Response to virus | GO:0009615 | 0.006 | CCL19, EIF2AK2, Mx, OASL, RSAD2 | ||
| Brown | 1383 | Translation | GO:0006412 | 2.4E-16 | EIF3(I/J), EIF4E(3/BP1), RPL(3/4/6/8/9/12/13/19/21/23/27/31/32/37/39), MRPL(10/20/22/44/47/51), RPS(2/3/7/14/16/21/24/28/29) |
| Mitochondrial transport | GO:0006839 | 0.022 | BCL2L1, BNIP3, MPC(1/2), MTX2, SLC25A(4/17/21/43) | ||
| Ribosome biogenesis | GO:0042254 | 0.016 | RPL(6/10 A/12/23 A), RPS(10/14/16/21/24/28), UTP(11 L/20) | ||
| Cellular component organization | GO:0016043 | 0.006 | CHCHD(4/10), COX(17/18/19), EIF3(I/J), KCTD(2/3), RPS(3/10/14/28), RPL(12/23), SLC25A(4/33), SNX(3/5) | ||
| Yellow | 1303 | Cell communication | GO:0007154 | 0.006 | CD (4/28/151/180), GPR (27/39/144/149/157/162) |
| Cellular response to stimulus | GO:0051716 | 0.002 | CD (4/28/151/180), EIF2AK1, FAS, GPR (27/39/144/149/157/162), PIK3C2G, PLA2R1, TNFRSF(18/21) | ||
| Cellular nitrogen compound biosynthetic process | GO:0044271 | 0.025 | CHDH, CMPK, CPEB1, GUCY(1B2/2 C), HOXA7, NPPA, PAPSS1, PHOX2B, RX1, SUPT3H, TERT, THRB, UPP1 | ||
| Green | 1259 | Organic substance transport | GO:0071702 | 0.037 | CD40LG, EIF5A2, SLC2A(6/9), SLC16A(1/7/10), SLC27A(4/6), SLC(15A4/17A5/18A2/22A3/26A5/29A4/35A3) |
Note: Genes within the same family are labeled with the member or subunit names in the brackets.