Table 1. Genes and models used for phylogenetic analysis.
| Gene | Model | Partition | -lnL | p | BIC |
|---|---|---|---|---|---|
| TIGR00012 | HKY+I | 10 010 | 447, 7861 | 241 | 2210, 3046 |
| TIGR00060 | HKY+G | 10 010 | 1087, 7826 | 241 | 3611, 5456 |
| TIGR00064 | GTR+I | 12 345 | 4830, 304 | 245 | 11 392, 1013 |
| TIGR00166 | HKY+I | 10 010 | 672, 6171 | 241 | 2710, 0077 |
| TIGR00436 | GTR+G | 12 345 | 4045, 8933 | 245 | 9757, 282 |
| TIGR00468 | GTR+I | 12 345 | 4002, 9428 | 245 | 9713, 7144 |
| TIGR00496 | GTR+G | 12 345 | 2048, 4794 | 245 | 5645, 106 |
| TIGR00631 | HKY+G | 10 010 | 9093, 5085 | 241 | 20 030, 593 |
| TIGR00952 | HKY+G | 10 010 | 689, 3193 | 241 | 2725, 1656 |
| TIGR01066 | GTR+I | 12 345 | 1055, 8994 | 245 | 3603, 6147 |
| TIGR01164 | HKY+I | 10 010 | 897, 8683 | 241 | 3253, 1532 |
| TIGR01308 | HKY+I | 10 010 | 423, 0226 | 241 | 2097, 5478 |
| TIGR01455 | GTR+G | 12 345 | 5535, 952 | 245 | 12 838, 3735 |
| TIGR02012 | GTR+I+G | 12 345 | 10 450, 698 | 246 | 22 893, 7369 |
| NRPS16 | HKY+I+G | 10 010 | 32 670, 0197 | 56 | 65 880, 3644 |
List of single copy genes used (TigrFam IDs) and associated model selection results from jmodeltest2. Models shown, HKY: Hasegawa–Kishino–Yano, GTR: general time reversible, G: gamma distribution, I: invariant sites. Parameters shown, BIC: Bayesian information criterion, -lnL: negative log likelihood, partition: substitution code of the model, p: number of model parameters (K).